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Practical innovations for high-throughput amplicon sequencing

A set of practical improvements and software provide more accurate and less biased metagenomic amplicon sequencing at lower sequencing effort.

Derek S Lundberg
Scott Yourstone
Jeffery L Dangl
Research01 Sept 2013
Nature Methods

Volume: 10, P: 999-1002
Defining the core Arabidopsis thaliana root microbiome

Sequencing of the Arabidopsis thaliana root microbiome shows that its composition is strongly influenced by location, inside or outside the root, and by soil type.

Derek S. Lundberg
Sarah L. Lebeis
Jeffery L. Dangl
Research01 Aug 2012
Nature

Volume: 488, P: 86-90
Seed coating with a neonicotinoid insecticide negatively affects wild bees

Neonicotinoid seed coating is associated with reduced density of wild bees, as well as reduced nesting of solitary bees and reduced colony growth and reproduction of bumblebees, but appears not to affect honeybees.

Maj Rundlöf
Georg K. S. Andersson
Henrik G. Smith
Research22 Apr 2015
Nature

Volume: 521, P: 77-80
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

Laboratory-based studies of the effect of plant genotype on plant microbiome composition often do not consider the influence of environmental heterogeneity. Here, Wagner et al. use a large-scale field experiment to assess the extent of host genetic and environmental factors on the microbiome of Boechera stricta.

Maggie R. Wagner
Derek S Lundberg
Thomas Mitchell-Olds
ResearchOpen Access12 Jul 2016
Nature Communications

Volume: 7, P: 1-15
Mutations in isocitrate dehydrogenase 1 and 2 occur frequently in intrahepatic cholangiocarcinomas and share hypermethylation targets with glioblastomas

P Wang
Q Dong
D Y Chiang
Research23 Jul 2012
Oncogene

Volume: 32, P: 3091-3100

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Practical innovations for high-throughput amplicon sequencing

Defining the core Arabidopsis thaliana root microbiome

Seed coating with a neonicotinoid insecticide negatively affects wild bees

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

Mutations in isocitrate dehydrogenase 1 and 2 occur frequently in intrahepatic cholangiocarcinomas and share hypermethylation targets with glioblastomas

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Practical innovations for high-throughput amplicon sequencing

Defining the core Arabidopsis thaliana root microbiome

Seed coating with a neonicotinoid insecticide negatively affects wild bees

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

Mutations in isocitrate dehydrogenase 1 and 2 occur frequently in intrahepatic cholangiocarcinomas and share hypermethylation targets with glioblastomas

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