Filter By:

Journal Check one or more journals to show results from those journals only.

Choose more journals

Article type Check one or more article types to show results from those article types only.
Subject Check one or more subjects to show results from those subjects only.
Date Choose a date option to show results from those dates only.

Custom date range

Clear all filters
Sort by:
Showing 101–150 of 419 results
Advanced filters: Author: S Parrinello Clear advanced filters
  • Structural and biochemical studies of the Mycobacterium smegmatis hydrogenase Huc provides insights into how [NiFe] hydrogenases oxidize trace amounts of atmospheric hydrogen and transfer the electrons liberated via quinone transport.

    • Rhys Grinter
    • Ashleigh Kropp
    • Chris Greening
    ResearchOpen Access
    Nature
    Volume: 615, P: 541-547
  • SARS-CoV-2 main protease adapts a disulfide bonded inactive state to escape oxidative stress. Here, the authors report a crystal structure of an inactive conformation of the enzyme achieved through a H163A mutation, and the mechanistic details of conformational changes using atomistic simulations.

    • Norman Tran
    • Sathish Dasari
    • Aravindhan Ganesan
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • Temperature-induced insulator-to-metal transitions are usually accompanied by structural phase transitions. Here the authors demonstrate an enhancement of the electrical conductance in a thin film of a biologically relevant metal-organic framework, without noticeable change in the structure, assigned to be of mainly electronic origin.

    • Pooja Sindhu
    • K. S. Ananthram
    • Nirmalya Ballav
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-9
  • Biochemical and structural approaches define how the chaperone TAPBPR interacts with MR1 molecules, including empty and ligand-loaded MR1, and facilitates presentation of metabolite-derived antigen ligands by MR1 complexes.

    • Andrew C. McShan
    • Christine A. Devlin
    • Nikolaos G. Sgourakis
    Research
    Nature Chemical Biology
    Volume: 18, P: 859-868
  • A difference in the survival of respiratory chain complex III deficient Bcs1lp.S78G mice was observed between two congenic mouse strains. Here the authors show how in one of the strains the combined effects of a spontaneously arising non-pathogenic variant and the disease-causing Bcs1lp.S78G mutation exacerbate CIII deficiency and disease progression.

    • Janne Purhonen
    • Vladislav Grigorjev
    • Jukka Kallijärvi
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Host proteins CPSF6, NUP153, and SEC24C are vital for HIV-1 infection. They bind to the viral capsid protein and contribute to shuttling of virions through the cytoplasm (SEC24C), import into the nucleus (NUP153 and CPSF6) and subsequent trafficking to preferred integration sites (CPSF6). Here, Wei et al. combine structural, biochemical and virological assays to emphasize the importance of prion-like low complexity domains surrounding short phenylalanine-glycine regions in binding and increasing the avidity when interacting with viral capsid.

    • Guochao Wei
    • Naseer Iqbal
    • Mamuka Kvaratskhelia
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-19
  • A newly developed maternally selective nanobody antagonist against the angiotensin II type I receptor stabilizes the receptor in a hybrid conformation and simultaneously binds with specific small-molecule antagonists.

    • Meredith A. Skiba
    • Sarah M. Sterling
    • Andrew C. Kruse
    Research
    Nature Chemical Biology
    Volume: 20, P: 1577-1585
  • Here, the authors present four high-resolution structures of SyHR protein from cyanobacterial anion pumps family: chloride and sulfate bound forms and two active state structures. These structures provide insights into the molecular mechanisms of SyHR and cyanobacterial anion pumps in general.

    • R. Astashkin
    • K. Kovalev
    • V. Gordeliy
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-13
  • Family 43 glycoside hydrolases (GH43) are involved in the breakdown of hemicellulose. Functional, structural and computational characterization of a GH43 enzyme, including a snapshot of an active Michaelis complex, reveal the hydrolysis mechanism and suggest two possible reaction pathways.

    • Mariana A. B. Morais
    • Joan Coines
    • Mario T. Murakami
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • P1B-type ATPases export excess transition metals from cells. Here, the authors report a molecular structure of CopA, a coppertransporting P1B-ATPase from A. fulgidus, in an inward-facing E1 conformation.

    • Nina Salustros
    • Christina Grønberg
    • Pontus Gourdon
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-11
  • Claudin family proteins are important for regulating epithelial barrier function. Here the authors show that claudin-23 controls paracellular flux by combining with other claudins to alter tight junction architecture and permeability.

    • Arturo Raya-Sandino
    • Kristen M. Lozada-Soto
    • Asma Nusrat
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-22
  • Human disease mutations affect protein–protein interfaces in a three-dimensional structurally resolved interaction network. Predicted oncoPPIs in cancer correlate with survival and drug sensitivity, and affect growth in vitro, supporting their relevance to disease pathogenesis.

    • Feixiong Cheng
    • Junfei Zhao
    • Joseph Loscalzo
    Research
    Nature Genetics
    Volume: 53, P: 342-353
  • Flycatcher1 (FLYC1) is a candidate mechanosensitive channel involved in Venus flytrap touch-induced prey capture. Here, the authors report structural and functional details of FLYC1, with insights into gating conformational transitions.

    • Sebastian Jojoa-Cruz
    • Kei Saotome
    • Andrew B. Ward
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-11
  • Bacterial O antigen polysaccharides play a role in innate immune response evasion. Here, the authors uncover the ATP-bound structure of the Aquifex aeolicus WzmWzt O antigen ABC transporter, shedding light onto the mechanism of lipid-linked polysaccharide translocation.

    • Christopher A. Caffalette
    • Robin A. Corey
    • Jochen Zimmer
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • The condensation of RNA polymerase II (Pol II) into transcriptionally active clusters is critical for eukaryotic gene regulation and pre-mRNA transcription. Here the authors show that a tight network of tyrosine-proline interactions imparts temperature and concentration-dependent self-coacervation of Pol II’s C-terminal domain (CTD).

    • David Flores-Solis
    • Irina P. Lushpinskaia
    • Markus Zweckstetter
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Disease-causing variants define a conserved and unique NR5A1 responsive enhancer for SRY expression to initiate testis-determination in humans. Modelling regulatory variants causing sex-reversal provides a tool to understand global enhancer activity.

    • Denis Houzelstein
    • Caroline Eozenou
    • Ken McElreavey
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • Here the authors show that H2A.Z histone variant incorporation reduces the nucleosomal barrier for transcription. Furthermore their simulations reveal that H2A.Z facilitates spontaneous DNA unwrapping from the histone octamer and enhances nucleosome gaping.

    • Shuxiang Li
    • Tiejun Wei
    • Anna R. Panchenko
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-10
  • Structures of human cholecystokinin receptors in complex with various ligands or G-proteins reveal how different ligand types are recognized and the basis of peptide selectivity in this receptor family, and suggest a stepwise activation mechanism.

    • Xuefeng Zhang
    • Chenglin He
    • Qiang Zhao
    Research
    Nature Chemical Biology
    Volume: 17, P: 1230-1237
  • The chaperone SurA is involved in outer membrane protein (OMP) biogenesis in Gram-negative bacteria, but its mechanism of action is not fully understood. Combining mass spectrometric, biophysical and computational approaches, the authors here show how the conformational dynamics of SurA facilitate OMP binding.

    • Antonio N. Calabrese
    • Bob Schiffrin
    • Sheena E. Radford
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • Vinculin binding to talin is a key event in focal adhesion dynamics; yet, how vinculin is activated to recruit actin remains unknown. Here, the authors use a multiscale approach to reveal that talin activates vinculin through an intricate allosteric mechanism tightly regulated by force.

    • Florian Franz
    • Rafael Tapia-Rojo
    • Frauke Gräter
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-16
  • Gangliosides such as GM1 present in the outer leaflet of the plasma membrane of eukaryotic cells are essential for many cellular functions and pathogenic interactions. Here the authors show that the acyl chain structure of GM1 determines the establishment of nanodomains when actively clustered by actin, which depended on membrane cholesterol and phosphatidylserine or superimposed by the GM1-binding bacterial cholera toxin.

    • Senthil Arumugam
    • Stefanie Schmieder
    • Ludger Johannes
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • How different oncogenic Akt mutants can affect the response to Akt inhibitors is currently unclear. Here, the authors analyse somatic mutations of Akt1-3 isoforms in several human cancers, investigate their oncogenic effects and therapeutic relevance in vitro and confirm some of their data in a clinical trial testing the AKT inhibitor capivasertib in patients with solid tumors harboring AKT alterations.

    • Tripti Shrestha Bhattarai
    • Tambudzai Shamu
    • Barry S. Taylor
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-11
  • The membrane-shaping protein ARL6IP1 is involved in the selective degradation of the endoplasmic reticulum, and this process depends on its ubiquitination and interaction with other membrane-shaping proteins such as FAM134B.

    • Hector Foronda
    • Yangxue Fu
    • Christian A. Hübner
    ResearchOpen Access
    Nature
    Volume: 618, P: 402-410
  • Kemp eliminases are artificial enzymes that catalyze the concerted deprotonation and ring-opening of benzisoxazoles. Here, the authors use room-temperature X-ray crystallography to investigate changes to the conformational ensemble of the Kemp eliminase HG3 along a directed evolutionary trajectory, and develop an experimentally guided, ensemble-based computational enzyme design procedure.

    • Aron Broom
    • Rojo V. Rakotoharisoa
    • Roberto A. Chica
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Transmembrane proteins are important for cellular functions and synthetic analogues are of interest. Here the authors report on the design and testing of a synthetic multipass transmembrane channel which shows anisotropic responses to agonistic and antagonistic ligands.

    • Takahiro Muraoka
    • Daiki Noguchi
    • Kazushi Kinbara
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-9
  • The intrinsic disorder of histone tails poses challenges in their characterization. Here the authors apply extensive molecular dynamics simulations of the full nucleosome to show reversible binding to DNA with specific binding modes of different types of histone tails, where charge-altering modifications suppress tail-DNA interactions and may boost interactions between nucleosomes and nucleosome-binding proteins.

    • Yunhui Peng
    • Shuxiang Li
    • Anna R. Panchenko
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • Glucagon-like peptide-1 receptor (GLP-1R) plays an important role in glucose homeostasis and treatment of type 2 diabetes. Here authors report the peptide-free crystal structure of human GLP-1R in an inactive state which reveals a unique closed conformation of the extracellular domain.

    • Fan Wu
    • Linlin Yang
    • Raymond C. Stevens
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Mutation associated neoantigens are a family of highly specific therapeutic targets for the treatment of cancer. Here, the authors describe the cryo-EM structure of an antibody bound to a neoantigen complex providing insights into the specificity of the antibody.

    • Katharine M. Wright
    • Sarah R. DiNapoli
    • Sandra B. Gabelli
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-20
  • Areas of HIV envelope (Env) that aren’t covered by glycans are potential targets for antibodies. Here, the authors computationally design small protein mimics of four such epitopes and show that they can induce Env binding antibodies in rabbits.

    • Cheng Zhu
    • Elena Dukhovlinova
    • Nikolay V. Dokholyan
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-10
  • ABCG2, an ATP-binding cassette transporter, extrudes hundreds of hydrophilic and hydrophobic compounds from cells, playing roles in xenobiotic clearance or multidrug resistance in cancer. Gose et al provide key insights into ABCG2 substrate selection.

    • Tomoka Gose
    • Heather M. Aitken
    • John D. Schuetz
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Glycinergic synapses play a central role in motor control and pain processing in the central nervous system. Here, authors present cryo-EM structures of the full-length glycine receptors (GlyRs) reconstituted into lipid nanodiscs in the unliganded, glycine-bound and allosteric modulator-bound conformations and reveal global conformational changes underlying GlyR channel gating and modulation.

    • Arvind Kumar
    • Sandip Basak
    • Sudha Chakrapani
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Structural phase transitions are known to accommodate plastic deformation in some metals and ceramics. Here, the authors observe the in situtransformation of body-centred cubic molybdenum to face-centred cubic, and finally to body-centred cubic, allowing for 15.4% tensile strain accommodation.

    • S. J. Wang
    • H. Wang
    • S. X. Mao
    ResearchOpen Access
    Nature Communications
    Volume: 5, P: 1-9
  • The uptake of hydrophobic molecules by bacterial FadL channels is implicated in quorum sensing, interactions with eukaryotic hosts and biodegradation of many pollutants. Insights into monoaromatic hydrocarbon uptake by TodX and CymD channels suggest that all FadL channels mediate substrate uptake via lateral diffusion.

    • Kamolrat Somboon
    • Anne Doble
    • Bert van den Berg
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Tetraspanins play critical roles in various physiological processes, ranging from cell adhesion to virus infection. Here authors report the crystal structure of CD9 and the cryo-electron microscopic structure of CD9 in complex with its single membrane-spanning partner protein, EWI-2.

    • Rie Umeda
    • Yuhkoh Satouh
    • Osamu Nureki
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • Superlubricity is important for energy and biomedical applications but typical building blocks are limited to synthetically-sourced polymeric materials. Here, self-assembly of plant-based protofilaments in biopolymeric hydrogels were engineered offering superlubricity performance.

    • Olivia Pabois
    • Yihui Dong
    • Anwesha Sarkar
    ResearchOpen Access
    Communications Materials
    Volume: 5, P: 1-13
  • In situ liquid-cell electrochemical transmission electron microscopy allows the direct visualization of the transformation of lithium polysulfides over electrode surfaces at the atomic scale, leading to a new energy-storage mechanism in lithium–sulfur batteries.

    • Shiyuan Zhou
    • Jie Shi
    • Hong-Gang Liao
    Research
    Nature
    Volume: 621, P: 75-81