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Showing 1–5 of 5 results
Advanced filters: Author: Sergey Aganezov Clear advanced filters
  • We present the complete 62,460,029-base-pair sequence of a human Y chromosome from the HG002 genome (T2T-Y) that corrects multiple errors in GRCh38-Y and adds over 30 million base pairs of sequence to the reference.

    • Arang Rhie
    • Sergey Nurk
    • Adam M. Phillippy
    Research
    Nature
    Volume: 621, P: 344-354
  • The assignment of genetic variants to the two copies of the genome present in cells (phasing) is crucial for predicting the consequences, interaction and inheritance of variants, but is limited by the length of sequencing reads and stretches of homozygosity in the genome. Here the authors develop a method that utilizes DNA methylation signals from Oxford Nanopore Technologies sequencing data to improve phasing.

    • Yilei Fu
    • Sergey Aganezov
    • Fritz J. Sedlazeck
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • Accurate, phased assemblies are a key tool in understanding the human genome, particularly in highly polymorphic regions like the medically important MHC. Here the authors provide an assembly-based benchmark for this difficult-to-characterize region.

    • Chen-Shan Chin
    • Justin Wagner
    • Justin M. Zook
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-9
  • An optimized pipeline for improved inference and analysis of structural variants (SVs) has been developed, which uses Iris for refining breakpoints and sequences, and Jasmine for comparing SV calls at population scale.

    • Melanie Kirsche
    • Gautam Prabhu
    • Michael C. Schatz
    Research
    Nature Methods
    Volume: 20, P: 408-417