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Showing 51–100 of 153 results
Advanced filters: Author: Seth R Bank Clear advanced filters
  • Systematic analysis of the zebrafish synapse proteome has been lacking. Here the authors characterize the ultrastructure of zebrafish synapse and compare the proteomes of postsynaptic density in zebrafish and mice, offering a resource for future studies using zebrafish to model diseases.

    • Àlex Bayés
    • Mark O. Collins
    • Seth G. N. Grant
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-15
  • This paper reports integrative molecular analyses of urothelial bladder carcinoma at the DNA, RNA, and protein levels performed as part of The Cancer Genome Atlas project; recurrent mutations were found in 32 genes, including those involved in cell-cycle regulation, chromatin regulation and kinase signalling pathways; chromatin regulatory genes were more frequently mutated in urothelial carcinoma than in any other common cancer studied so far.

    • John N. Weinstein
    • Rehan Akbani
    • Greg Eley
    ResearchOpen Access
    Nature
    Volume: 507, P: 315-322
  • Initiation is the rate limiting step of protein translation. Here the authors show that recycling of the free ribosomal 40 S subunit is regulated by the deubiquitinase OTUD6. OTUD6 deubiquitinates monoubiquitinated RPS7/eS7 to promote 40 S recycling into the preinitiation complex.

    • Sammy Villa
    • Pankaj Dwivedi
    • Fred W. Wolf
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • Control of movements can be understood in terms of the interplay between a controller, a simulator and an estimator. Egger et. al. show that cortical neurons establish the same building blocks to control cognitive states in the absence of movement.

    • Seth W. Egger
    • Evan D. Remington
    • Mehrdad Jazayeri
    Research
    Nature Neuroscience
    Volume: 22, P: 1871-1882
  • Analogues of α-ketoglutarate are used in many cellular studies but assumptions are made about cellular uptake. Here, the authors show that esterified analogues rapidly hydrolyse in aqueous medium resulting in an analogue which can be quickly taken up by many cell lines, contrary to prevailing assumptions.

    • Seth J. Parker
    • Joel Encarnación-Rosado
    • Alec C. Kimmelman
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • The function of macrophages in myeloid leukaemia can be difficult to assess because of lack of differentiation between transformed and non-transformed cells. Here the authors use a chimeric mouse model to characterise the effect of myeloid leukaemia on bystander macrophages noting altered functional properties of these cells.

    • Amy Dawson
    • Martha M. Zarou
    • G. Vignir Helgason
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-19
  • The protein composition of excitatory synapses differs in the areas of the human neocortex controlling language, emotion and other behaviors. This neocortical postsynaptic proteome data resource can be used to link genetics to brain imaging and behavior.

    • Marcia Roy
    • Oksana Sorokina
    • Seth G. N. Grant
    Research
    Nature Neuroscience
    Volume: 21, P: 130-138
  • Kimmelman and colleagues show that inhibition of glutamine (Gln) metabolism using a Gln antagonist decreases pancreatic cancer tumor growth, but is compensated by upregulation of extracellular signal-regulated kinase signaling, which can be co-targeted.

    • Joel Encarnación-Rosado
    • Albert S. W. Sohn
    • Alec C. Kimmelman
    ResearchOpen Access
    Nature Cancer
    Volume: 5, P: 85-99
  • Cryo-EM is used to visualize the SARS-CoV-2 RTC bound to each of the natural NTPs as well as remdesivir triphosphate (RDV-TP) in states poised for incorporation, explaining the interactions required for NTP recognition and RDV-TP selectivity.

    • Brandon F. Malone
    • Jason K. Perry
    • Seth A. Darst
    Research
    Nature
    Volume: 614, P: 781-787
  • Fine-scale geospatial mapping of overweight and wasting (two components of the double burden of malnutrition) in 105 LMICs shows that overweight has increased from 5.2% in 2000 to 6.0% in children under 5 in 2017. Although overall wasting decreased over the same period, most countries are not on track to meet the World Health Organization’s Global Nutrition Target of <5% in over half of LMICs by 2025.

    • Damaris K. Kinyoki
    • Jennifer M. Ross
    • Simon I. Hay
    ResearchOpen Access
    Nature Medicine
    Volume: 26, P: 750-759
  • Avoiding catastrophic climate change requires that we avoid losing key natural carbon reserves. This study maps such irrecoverable carbon globally and finds a third of the remaining managed by Indigenous peoples and local communities and nearly a quarter in protected areas.

    • Monica L. Noon
    • Allie Goldstein
    • Will R. Turner
    ResearchOpen Access
    Nature Sustainability
    Volume: 5, P: 37-46
  • Understanding of the mycobacterial transcription system is useful to the development of therapeutics against tuberculosis infection. Here the authors present the crystal structure of a completeM. smegmatisRNA polymerase open promoter complex that reveals unique features of the mycobacterial polymerase.

    • Elizabeth A. Hubin
    • Mirjana Lilic
    • Elizabeth A. Campbell
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • Laser microdissection and microarrays are used to assess 900 precise subdivisions of the brains from three healthy men with 60,000 gene expression probes; the resulting atlas allows comparisons between humans and other animals, and will facilitate studies of human neurological and psychiatric diseases.

    • Michael J. Hawrylycz
    • Ed S. Lein
    • Allan R. Jones
    Research
    Nature
    Volume: 489, P: 391-399
  • An analysis of longitudinal cohort data across diverse populations suggests that the incidence of wasting between birth and 24 months is higher than previously thought, and highlights the role of seasonal factors that affect child growth.

    • Andrew Mertens
    • Jade Benjamin-Chung
    • Pablo Penataro Yori
    ResearchOpen Access
    Nature
    Volume: 621, P: 558-567
  • Cancer cells have altered lipid metabolism. Here the authors show that DAXX promotes lipogenesis and tumorigenesis through interaction with SREBP1/2.

    • Iqbal Mahmud
    • Guimei Tian
    • Daiqing Liao
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-20
  • The online game Foldit invites players to solve problems involving protein structure prediction. Now Foldit players have been recruited to work on a modeling problem and ultimately solve the crystal structure of a retroviral protease that had resisted previous determination.

    • Firas Khatib
    • Frank DiMaio
    • David Baker
    Research
    Nature Structural & Molecular Biology
    Volume: 18, P: 1175-1177
  • The RNA endonuclease CPSF3 was identified as the cellular efficacy target of the small molecule JTE-607, revealing pre-mRNA processing as a vulnerability in cancers such as Ewing’s sarcoma that are characterized by aberrant transcription.

    • Nathan T. Ross
    • Felix Lohmann
    • Rohan E. J. Beckwith
    Research
    Nature Chemical Biology
    Volume: 16, P: 50-59
  • The seeding of native species is critical to the success of dryland restoration efforts. Here the authors evaluate success of seeding establishment at 174 sites on six continents, finding that some sites had nearly 100% of species successfully recruit, while 17% of sites had zero seedling success.

    • Nancy Shackelford
    • Gustavo B. Paterno
    • Katharine L. Suding
    Research
    Nature Ecology & Evolution
    Volume: 5, P: 1283-1290
  • A pooled analysis of longitudinal studies in low- and middle-income countries identifies the typical age of onset of linear growth faltering and investigates recurrent faltering in early life.

    • Jade Benjamin-Chung
    • Andrew Mertens
    • Pablo Penataro Yori
    ResearchOpen Access
    Nature
    Volume: 621, P: 550-557
  • An RNA aptamer that selectively binds FAD over FADH2 shifted the reduction potential of the bound cofactor, similar to flavoproteins, and was shown through structural characterization to use π–π and donor–π interactions to drive the shift.

    • John S. Samuelian
    • Thomas J. Gremminger
    • Dana A. Baum
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 18, P: 1263-1269
  • Experiments in mouse and hamster models show that monoclonal antibody combinations, using antibodies that correspond to products in clinical development, largely retain their efficacy in protecting against currently prevailing variant strains of SARS-CoV-2.

    • Rita E. Chen
    • Emma S. Winkler
    • Michael S. Diamond
    Research
    Nature
    Volume: 596, P: 103-108
  • Programmable triangular DNA blocks self-assemble into distinct icosahedral shells with specific geometry and apertures that can encapsulate viruses and decrease viral infection.

    • Christian Sigl
    • Elena M. Willner
    • Hendrik Dietz
    Research
    Nature Materials
    Volume: 20, P: 1281-1289
  • Although progress in the coverage of routine measles vaccination in children in low- and middle-income countries was made during 2000–2019, many countries remain far from the goal of 80% coverage in all districts by 2019.

    • Alyssa N. Sbarra
    • Sam Rolfe
    • Jonathan F. Mosser
    ResearchOpen Access
    Nature
    Volume: 589, P: 415-419
  • The Cancer Genome Atlas Research Network report integrated genomic and molecular analyses of 164 squamous cell carcinomas and adenocarcinomas of the oesophagus; they find genomic and molecular features that differentiate squamous and adenocarcinomas of the oesophagus, and strong similarities between oesophageal adenocarcinomas and the chromosomally unstable variant of gastric adenocarcinoma, suggesting that gastroesophageal adenocarcinoma is a single disease entity.

    • Jihun Kim
    • Reanne Bowlby
    • Jiashan Zhang
    ResearchOpen Access
    Nature
    Volume: 541, P: 169-175
  • A crystal structure of the RNA-binding domain of Tetrahymena telomerase reverse transcriptase (TERT) with its template RNA (TER) reveals interactions that establish the template boundary element and direct the addition of telomeric DNA repeats.

    • Linnea I Jansson
    • Ben M Akiyama
    • Michael D Stone
    Research
    Nature Structural & Molecular Biology
    Volume: 22, P: 883-888
  • A super-Förster energy-transfer regime, where coherent and incoherent energy transport processes enhance the diffusion of excitons, is observed at room temperature by tuning the distance between the chromophores’ binding sites in a virus scaffold.

    • Heechul Park
    • Nimrod Heldman
    • Angela M. Belcher
    Research
    Nature Materials
    Volume: 15, P: 211-216
  • Inhibition of the autophagy–lysosome system upregulates surface expression of MHC class I proteins and enhances antigen presentation, and evokes a potent anti-tumour immune response that is mediated by CD8+ T cells.

    • Keisuke Yamamoto
    • Anthony Venida
    • Alec C. Kimmelman
    Research
    Nature
    Volume: 581, P: 100-105
  • Neurofibromatosis type 1 (NF1) is a genetic disorder caused by mutations in neurofibromin and associated with disruptions in physiology and behavior. Here the authors show that neurofibromin regulates metabolic homeostasis via a discrete brain circuit in a Drosophila model of NF1.

    • Valentina Botero
    • Bethany A. Stanhope
    • Seth M. Tomchik
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • Reported COVID-19 mortality rates have been relatively low in Syria, but there has been concern about overwhelmed health systems. Here, the authors use community mortality indicators and estimate that <3% of COVID-19 deaths in Damascus were reported as of 2 September 2020.

    • Oliver J. Watson
    • Mervat Alhaffar
    • Patrick Walker
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • The MuvB protein complex regulates genes that are differentially expressed through the cell cycle, yet its precise molecular function has remained unclear. Here the authors reveal MuvB associates with the nucleosome adjacent to the transcription start site of cell-cycle genes and that the tight positioning of this nucleosome correlates with MuvB-dependent gene repression.

    • Anushweta Asthana
    • Parameshwaran Ramanan
    • Seth M. Rubin
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-15
  • In this disease mapping study, the authors estimate disability-adjusted life year rates for three of the major causes of mortality for children under five 43 countries in sub-Saharan Africa. They identify significant heterogeneity at the subnational level, highlighting the need for a targeted intervention approach.

    • Robert C. Reiner Jr.
    • Catherine A. Welgan
    • Simon I. Hay
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • Through its association with Cdk–cyclin complexes, Cks has been implicated in the multisite phosphorylation of numerous cell cycle–regulatory proteins. A structural analysis of Cks1 bound to a target phosphopeptide, combined with binding-specificity studies, now reveals a Cks-binding consensus sequence and how Cks1 confers phosphodependent substrate specificity to Cdk1.

    • Denise A McGrath
    • Eva Rose M Balog
    • Seth M Rubin
    Research
    Nature Structural & Molecular Biology
    Volume: 20, P: 1407-1414
  • This paper describes molecular subtypes of cervical cancers, including squamous cell carcinoma and adenocarcinoma clusters defined by HPV status and molecular features, and distinct molecular pathways that are activated in cervical carcinomas caused by different somatic alterations and HPV types.

    • Robert D. Burk
    • Zigui Chen
    • David Mutch
    ResearchOpen Access
    Nature
    Volume: 543, P: 378-384
  • Glypican-1 identifies cancer exosomes and serves as a biomarker for detection of early pancreatic cancer in patients and mouse models of the disease; the findings may enable early and non-invasive identification, and prevention of malignant cancer.

    • Sonia A. Melo
    • Linda B. Luecke
    • Raghu Kalluri
    Research
    Nature
    Volume: 523, P: 177-182
  • Upon DNA binding cyclic GMP-AMP synthase (cGAS) produces a cyclic dinucleotide, which leads to the upregulation of inflammatory genes. Here the authors develop small molecule cGAS inhibitors, functionally characterize them and present the inhibitor and DNA bound cGAS crystal structures, which will facilitate drug development.

    • Jessica Vincent
    • Carolina Adura
    • Manuel Ascano
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-13
  • An integrative genomic analysis of several hundred endometrial carcinomas shows that a minority of tumour samples carry copy number alterations or TP53 mutations and many contain key cancer-related gene mutations, such as those involved in canonical pathways and chromatin remodelling; a reclassification of endometrial tumours into four distinct types is proposed, which may have an effect on patient treatment regimes.

    • Douglas A. Levine
    • Gad Getz
    • Douglas A. Levine
    ResearchOpen Access
    Nature
    Volume: 497, P: 67-73
  • Resistance to rifamycin antibiotics, which target bacterial RNA polymerases, is a growing problem. Here, the authors identify gene clusters from soil metagenomes encoding production of rifamycin analogues that are active against rifampicin-resistant bacteria through a distinct mechanism.

    • James Peek
    • Mirjana Lilic
    • Sean F. Brady
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-15
  • The Cancer Genome Atlas reports on molecular evaluation of 295 primary gastric adenocarcinomas and proposes a new classification of gastric cancers into 4 subtypes, which should help with clinical assessment and trials of targeted therapies.

    • Adam J. Bass
    • Vesteinn Thorsson
    • Jia Liu
    ResearchOpen Access
    Nature
    Volume: 513, P: 202-209
  • SPAK kinase is a master regulator of cation-Cl cotransporters. Here the authors describe a new SPAK inhibitor with robust protective effects in rodent hydrocephalous and ischemic stroke models.

    • Jinwei Zhang
    • Mohammad Iqbal H. Bhuiyan
    • Xianming Deng
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17