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Correction: Corrigendum: Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells

Burak Okumus
Dirk Landgraf
Johan Paulsson
Amendments and CorrectionsOpen Access24 Jun 2016
Nature Communications

Volume: 7, P: 1
Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence

Tracking individual bacterial cells entering and exiting stationary phase under precise environmental controls reveals different size-control principles along the growth curve, and shows that cells that become persisters on exit from stationary phase are those that divided more times upon entry.

Somenath Bakshi
Emanuele Leoncini
Johan Paulsson
Research20 May 2021
Nature Microbiology

Volume: 6, P: 783-791
Metabolic control of porin permeability influences antibiotic resistance in Escherichia coli

The permeability of bacterial porins is dynamically regulated by periplasmic proton and potassium concentrations, altering antibiotic resistance.

Santiago E. Caño Muñiz
Stephen Trigg
R. Andres Floto
ResearchOpen Access24 Nov 2025
Nature Microbiology

Volume: 10, P: 3202-3214
Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells

Several proteins are expressed at too low abundance in the Escherichia coli (E. coli) proteome to be detected by standard methods. Here, the authors create a microfluidics-based platform enabling single-molecule counting of low-abundance proteins by mechanically slowing-down their diffusion in live E. coli.

Burak Okumus
Dirk Landgraf
Johan Paulsson
ResearchOpen Access18 May 2016
Nature Communications

Volume: 7, P: 1-11
Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator

Synthetic gene oscillators can be used to control timed function and periodic expression of genes. Here the authors demonstrate in vivo implementation in the mammalian gut that can keep time over several days.

David T. Riglar
David L. Richmond
Pamela A. Silver
ResearchOpen Access11 Oct 2019
Nature Communications

Volume: 10, P: 1-12
Author Correction: Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator

David T. Riglar
David L. Richmond
Pamela A. Silver
Amendments and CorrectionsOpen Access16 Mar 2021
Nature Communications

Volume: 12, P: 1-2
Quantitative microbiology with widefield microscopy: navigating optical artefacts for accurate interpretations

Georgeos Hardo
Ruizhe Li
Somenath Bakshi
ResearchOpen Access02 Sept 2024
npj Imaging

Volume: 2, P: 1-16
Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy

Alessia Lepore
Hannah Taylor
M. El Karoui
ResearchOpen Access27 May 2019
Scientific Reports

Volume: 9, P: 1-9
Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform

This protocol describes a microfluidics platform, termed 'MACS', for single-cell microscopy of suspension cells. MACS temporarily immobilizes the cells, allowing for high-throughput and high-resolution imaging, cell sorting, and single-molecule detection.

Burak Okumus
Charles J Baker
Johan Paulsson
Protocols21 Dec 2017
Nature Protocols

Volume: 13, P: 170-194

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Correction: Corrigendum: Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells

Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence

Metabolic control of porin permeability influences antibiotic resistance in Escherichia coli

Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells

Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator

Author Correction: Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator

Quantitative microbiology with widefield microscopy: navigating optical artefacts for accurate interpretations

Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy

Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform

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