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Showing 251–300 of 332 results

Advanced filters: Author: Stephen Mac Clear advanced filters

Identification of candidate genes on chromosome band 20q12 by physical mapping of translocation breakpoints found in myeloid leukemia cell lines

Donal MacGrogan
Sara Alvarez
Stephen D Nimer
Research17 Jul 2001
Oncogene

Volume: 20, P: 4150-4160
Automatic phenotyping using exhaustive projection pursuit

An automated tool (EPP) identifies distinct cell phenotypes in flow cytometry data through optimized 2D gating as shown in 4 published datasets. EPP’ C++ code integrates with any software, as demonstrated in MATLAB with FlowJo.

Wayne A. Moore
Stephen W. Meehan
Leonore A. Herzenberg
ResearchOpen Access12 Aug 2025
Communications Biology

Volume: 8, P: 1-13
Integrative genomics reveals paths to sex dimorphism in Salix purpurea L

Brennan Hyden
Craig H. Carlson
Lawrence B. Smart
ResearchOpen Access01 Aug 2021
Horticulture Research

Volume: 8, P: 1-14
Association between the expression of lncRNA BASP-AS1 and volume of right hippocampal tail moderated by episode duration in major depressive disorder: a CAN-BIND 1 report

Antoine Yrondi
Laura M. Fiori
Gustavo Turecki
ResearchOpen Access08 Sept 2021
Translational Psychiatry

Volume: 11, P: 1-7
Allogeneic transplantation after PD-1 blockade for classic Hodgkin lymphoma

Reid W. Merryman
Luca Castagna
Carmelo Carlo-Stella
Research03 Mar 2021
Leukemia

Volume: 35, P: 2672-2683
Definitions of disease burden across the spectrum of metastatic castration-sensitive prostate cancer: comparison by disease outcomes and genomics

Philip Sutera
Kim Van Der Eecken
Matthew P. Deek
Research11 Jan 2022
Prostate Cancer and Prostatic Diseases

Volume: 25, P: 713-719
Rapid response to the alpha-1 adrenergic agent phenylephrine in the perioperative period is impacted by genomics and ancestry

Stephane Wenric
Janina M. Jeff
Eimear E. Kenny
ResearchOpen Access10 Nov 2020
The Pharmacogenomics Journal

Volume: 21, P: 174-189
A genomic catalog of Earth’s microbiomes

Cataloging microbial genomes from Earth’s environments expands the known phylogenetic diversity of bacteria and archaea.

Stephen Nayfach
Simon Roux
Emiley A. Eloe-Fadrosh
ResearchOpen Access09 Nov 2020
Nature Biotechnology

Volume: 39, P: 499-509
Genome-wide meta-analysis of macronutrient intake of 91,114 European ancestry participants from the cohorts for heart and aging research in genomic epidemiology consortium

Jordi Merino
Hassan S. Dashti
Toshiko Tanaka
Research09 Jul 2018
Molecular Psychiatry

Volume: 24, P: 1920-1932
Polygenic risk score for the prediction of breast cancer is related to lesser terminal duct lobular unit involution of the breast

Clara Bodelon
Hannah Oh
Jonine D. Figueroa
ResearchOpen Access07 Sept 2020
npj Breast Cancer

Volume: 6, P: 1-6
CNspector: a web-based tool for visualisation and clinical diagnosis of copy number variation from next generation sequencing

John F. Markham
Satwica Yerneni
Piers Blombery
ResearchOpen Access23 Apr 2019
Scientific Reports

Volume: 9, P: 1-9
Structural characterization of CYP144A1 – a cytochrome P450 enzyme expressed from alternative transcripts in Mycobacterium tuberculosis

Jude Chenge
Madeline E. Kavanagh
Andrew W. Munro
ResearchOpen Access26 May 2016
Scientific Reports

Volume: 6, P: 1-12
QuPath: Open source software for digital pathology image analysis

Peter Bankhead
Maurice B. Loughrey
Peter W. Hamilton
ResearchOpen Access04 Dec 2017
Scientific Reports

Volume: 7, P: 1-7
QFMatch: multidimensional flow and mass cytometry samples alignment

Darya Y. Orlova
Stephen Meehan
Guenther Walther
ResearchOpen Access19 Feb 2018
Scientific Reports

Volume: 8, P: 1-14
Efficient electrochemical reduction of nitrate to ammonia over metal-organic framework single-atom catalysts

Producing ammonia is challenging and requires efficient and selective catalysts to drive the reaction. Here, a series of single-atom catalysts derived from UiO-66 containing structural defects show efficient electrochemical reduction of nitrate to ammonia.

Lutong Shan
Yujie Ma
Sihai Yang
ResearchOpen Access20 Jun 2024
Communications Materials

Volume: 5, P: 1-9
Increased manganese superoxide dismutase (SOD-2) is part of the mechanism for prostate tumor suppression by Mac25/insulin-like growth factor binding-protein-related protein-1

Stephen R Plymate
Kathy H Haugk
Terry D Oberley
Research19 Feb 2003
Oncogene

Volume: 22, P: 1024-1034
A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus

Alison Hardcastle et al. report a genome-wide meta-analysis of keratoconus, a condition affecting the cornea that causes blurred vision and often leads to blindness. They identify 36 genomic regions associated with keratoconus, 31 of which are novel, and show that the genes in these regions implicate genetic pathways involved in collagen matrix integrity and cell differentiation.

Alison J. Hardcastle
Petra Liskova
Pirro G. Hysi
ResearchOpen Access01 Mar 2021
Communications Biology

Volume: 4, P: 1-13
Exploring the links of skeletal muscle mitochondrial oxidative capacity, physical functionality, and mental well-being of cancer survivors

Stephen G. Gonsalves
Leorey N. Saligan
Nada Lukkahatai
ResearchOpen Access01 Feb 2024
Scientific Reports

Volume: 14, P: 1-12
SIRPα expression delineates subsets of intratumoral monocyte/macrophages with different functional and prognostic impact in follicular lymphoma

Ya-Ping Chen
Hyo Jin Kim
Stephen M. Ansell
ResearchOpen Access14 Oct 2019
Blood Cancer Journal

Volume: 9, P: 1-14
A tale of two parasites: Responses of honey bees infected with Nosema ceranae and Lotmaria passim

Courtney I. MacInnis
Lien T. Luong
Stephen F. Pernal
ResearchOpen Access18 Dec 2023
Scientific Reports

Volume: 13, P: 1-11
Automated subset identification and characterization pipeline for multidimensional flow and mass cytometry data clustering and visualization

Stephen Meehan, Gleb A. Kolyagin et al. present a fully automated subset identification and characterization pipeline for robust cluster matching and data visualization of high-dimensional flow/mass cytometry data. They show that the method can be applied to single- or multi-dimensional data.

Stephen Meehan
Gleb A. Kolyagin
Darya Y. Orlova
ResearchOpen Access20 Jun 2019
Communications Biology

Volume: 2, P: 1-12
Phenotypic and molecular characterization of beta-lactam resistant Multidrug-resistant Enterobacterales isolated from patients attending six hospitals in Northern Nigeria

Nubwa Medugu
Isabella A. Tickler
Stephen K. Obaro
ResearchOpen Access26 Jun 2023
Scientific Reports

Volume: 13, P: 1-10
Vanquishing the computational cost of passive gamma emission tomography simulations leveraging physics-aware reduced order modeling

Nicola Cavallini
Riccardo Ferretti
Andrea Favalli
ResearchOpen Access12 Sept 2023
Scientific Reports

Volume: 13, P: 1-13
Genome-wide association studies and fine-mapping identify genomic loci for n-3 and n-6 polyunsaturated fatty acids in Hispanic American and African American cohorts

A genome-wide association study highlights the shared or unique genetic etiology of polyunsaturated fatty acids across diverse ancestry groups.

Chaojie Yang
Jenna Veenstra
Ani Manichaikul
ResearchOpen Access16 Aug 2023
Communications Biology

Volume: 6, P: 1-15
Fragmentation by major dams and implications for the future viability of platypus populations

Major dams are found to disrupt platypus gene flow and dispersal, with higher genetic differentiation found across dams than along similar stretches of undammed rivers, indicating that they act as significant barriers to platypus movement.

Jose L. Mijangos
Gilad Bino
William B. Sherwin
ResearchOpen Access03 Nov 2022
Communications Biology

Volume: 5, P: 1-9
Genome-wide meta-analysis of iron status biomarkers and the effect of iron on all-cause mortality in HUNT

A GWAS on the four major iron-related biomarkers is conducted using data from the Trøndelag Health Study (HUNT), Michigan Genomics Initiative (MGI), and SardiNIA study, to identify 123 loci associated with iron homeostasis and effect on all-cause mortality.

Marta R. Moksnes
Sarah E. Graham
Ben M. Brumpton
ResearchOpen Access16 Jun 2022
Communications Biology

Volume: 5, P: 1-13
Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product

Zacchi et al. attempt to bridge the gap between understanding the impact of process variables and determination of critical post-translational modifications on a highly complex glycoprotein, factor IX. They implement an LC-MS/MS approach based on data independent acquisition which allows measurement of all detectable peptides, even with heterogeneous modifications.

Lucia F. Zacchi
Dinora Roche-Recinos
Christopher B. Howard
ResearchOpen Access23 Mar 2021
Communications Biology

Volume: 4, P: 1-19
Loss of SIRT1 inhibits hematopoietic stem cell aging and age-dependent mixed phenotype acute leukemia

Studies employing serial bone marrow transplantation in mice show that Sirt1 knockout improves quiescence maintenance and function of aging hematopoietic stem cells. Sirt1 loss also prevents the development of age-dependent B/myeloid mixed phenotype acute leukemia.

Zhiqiang Wang
Chunxiao Zhang
WenYong Chen
ResearchOpen Access28 Apr 2022
Communications Biology

Volume: 5, P: 1-15
Lentiviral and AAV-mediated expression of palivizumab offer protection against Respiratory Syncytial Virus infection

Agata Antepowicz
Omar Habib
Stephen C. Hyde
ResearchOpen Access03 Aug 2021
Scientific Reports

Volume: 11, P: 1-12
EBF1 drives hallmark B cell gene expression by enabling the interaction of PAX5 with the MLL H3K4 methyltransferase complex

Charles E. Bullerwell
Philippe Pierre Robichaud
Rodney J. Ouellette
ResearchOpen Access15 Jan 2021
Scientific Reports

Volume: 11, P: 1-14
Author Correction: A genomic catalog of Earth’s microbiomes

Stephen Nayfach
Simon Roux
Emiley A. Eloe-Fadrosh
Amendments and CorrectionsOpen Access01 Apr 2021
Nature Biotechnology

Volume: 39, P: 521
Machine Learning to Quantitate Neutrophil NETosis

Laila Elsherif
Noah Sciaky
Leslie V. Parise
ResearchOpen Access15 Nov 2019
Scientific Reports

Volume: 9, P: 1-12
Astrocyte Support for Oligodendrocyte Differentiation can be Conveyed via Extracellular Vesicles but Diminishes with Age

Cory M. Willis
Alexandra M. Nicaise
Stephen J. Crocker
ResearchOpen Access21 Jan 2020
Scientific Reports

Volume: 10, P: 1-14
Divergent short-chain fatty acid production and succession of colonic microbiota arise in fermentation of variously-sized wheat bran fractions

Yunus E. Tuncil
Riya D. Thakkar
Stephen R. Lindemann
ResearchOpen Access09 Nov 2018
Scientific Reports

Volume: 8, P: 1-13
Vigorous Intervals and Hypoglycemia in Type 1 Diabetes: A Randomized Cross Over Trial

Meaghan Rempel
Jane E. Yardley
Jonathan McGavock
ResearchOpen Access26 Oct 2018
Scientific Reports

Volume: 8, P: 1-9
Tilapia lake virus downplays innate immune responses during early stage of infection in Nile tilapia (Oreochromis niloticus)

Kizito K. Mugimba
Mustapha Lamkhannat
Øystein Evensen
ResearchOpen Access23 Nov 2020
Scientific Reports

Volume: 10, P: 1-12
Combining computer vision and deep learning to enable ultra-scale aerial phenotyping and precision agriculture: A case study of lettuce production

Alan Bauer
Aaron George Bostrom
Ji Zhou
ResearchOpen Access01 Jun 2019
Horticulture Research

Volume: 6, P: 1-12
Macrophages redirect phagocytosis by non-professional phagocytes and influence inflammation

Macrophage-derived insulin-like growth factor enhances the uptake of microvesicles by non-professional phagocytes, such as airway epithelial cells and fibroblasts, thereby dampening tissue inflammation.

Claudia Z. Han
Ignacio J. Juncadella
Kodi S. Ravichandran
Research07 Nov 2016
Nature

Volume: 539, P: 570-574
Publisher Correction: A genomic catalog of Earth’s microbiomes

Stephen Nayfach
Simon Roux
Emiley A. Eloe-Fadrosh
Amendments and CorrectionsOpen Access18 Nov 2020
Nature Biotechnology

Volume: 39, P: 520
Synthesis of Nm-PHB (nanomelanin-polyhydroxy butyrate) nanocomposite film and its protective effect against biofilm-forming multi drug resistant Staphylococcus aureus

George Seghal Kiran
Stephen A. Jackson
Joseph Selvin
ResearchOpen Access22 Aug 2017
Scientific Reports

Volume: 7, P: 1-13
Functional and proteomic analysis of Ceratonova shasta (Cnidaria: Myxozoa) polar capsules reveals adaptations to parasitism

Gadi Piriatinskiy
Stephen D. Atkinson
Tamar Lotan
ResearchOpen Access21 Aug 2017
Scientific Reports

Volume: 7, P: 1-10
Humoral protection against mosquito bite-transmitted Plasmodium falciparum infection in humanized mice

Brandon K. Sack
Sebastian A. Mikolajczak
Stefan H. I. Kappe
ResearchOpen Access09 Oct 2017
npj Vaccines

Volume: 2, P: 1-11
New paradigms for understanding and step changes in treating active and chronic, persistent apicomplexan infections

Martin McPhillie
Ying Zhou
Rima McLeod
ResearchOpen Access14 Jul 2016
Scientific Reports

Volume: 6, P: 1-23
Kinetics of CD11b/CD18 Up-Regulation During Infection with the Agent of Human Granulocytic Ehrlichiosis in Mice

Dori L Borjesson
Scott I Simon
Stephen W Barthold
Research01 Mar 2002
Laboratory Investigation

Volume: 82, P: 303-311
Necroptotic debris including damaged mitochondria elicits sepsis-like syndrome during late-phase tularemia

Anju Singh
Sivakumar Periasamy
Timothy J Sellati
ResearchOpen Access25 Sept 2017
Cell Death Discovery

Volume: 3, P: 1-12
Multiscale analysis of a regenerative therapy for treatment of volumetric muscle loss injury

Carlos A. Aguilar
Sarah M. Greising
Benjamin T. Corona
ResearchOpen Access20 Feb 2018
Cell Death Discovery

Volume: 4, P: 1-11
Human GPR42 is a transcribed multisite variant that exhibits copy number polymorphism and is functional when heterologously expressed

Henry L. Puhl III
Yu-Jin Won
Stephen R. Ikeda
ResearchOpen Access11 Aug 2015
Scientific Reports

Volume: 5, P: 1-14
Apocynin and Nox2 regulate NF-κB by modifying thioredoxin-1 redox-state

Silvia Cellone Trevelin
Célio Xavier dos Santos
Fernando Queiroz Cunha
ResearchOpen Access04 Oct 2016
Scientific Reports

Volume: 6, P: 1-12
Eastern South African hydroclimate over the past 270,000 years

Margit H. Simon
Martin Ziegler
Ian R. Hall
ResearchOpen Access21 Dec 2015
Scientific Reports

Volume: 5, P: 1-10
Disaggregating composite food codes in the UK National Diet and Nutrition Survey food composition databank

E Fitt
T N Mak
M Farron-Wilson
Research03 Nov 2010
European Journal of Clinical Nutrition

Volume: 64, P: S32-S36

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