Table 3 All 26 candidate SNP and InDel sites
Gene ID | Variant | Chrom | Pos | Ref | S63 | 05 ms | Alt |
|---|---|---|---|---|---|---|---|
Sme2.5_01069.1_g00012.1 | Nonsynonymous | Sme2.5_01069.1 | 90833 | A | A | G | G |
Sme2.5_01382.1_g00005.1 | Nonsynonymous | Sme2.5_01382.1 | 51348 | A | G | A | G |
Sme2.5_03095.1_g00005.1 | Nonsynonymous | Sme2.5_03095.1 | 56545 | A | G | A | G |
Sme2.5_03460.1_g00004.1 | Nonsynonymous | Sme2.5_03460.1 | 25055 | C | C | T | T |
Sme2.5_04634.1_g00002.1 | Nonsynonymous | Sme2.5_04634.1 | 35824 | G | A | G | A |
Sme2.5_10000.1_g00003.1 | Nonsynonymous | Sme2.5_10000.1 | 17151 | C | T | C | T |
Sme2.5_00018.1_g00016.1 | Upstream | Sme2.5_00018.1 | 149462 | A | A | G | G |
Sme2.5_00250.1_g00007.1 | Upstream | Sme2.5_00250.1 | 29371 | A | A | G | G |
Sme2.5_00481.1_g00008.1 | Upstream | Sme2.5_00481.1 | 82101 | C | A | C | A |
Sme2.5_01232.1_g00001.1 | Upstream | Sme2.5_01232.1 | 1945 | T | C | T | C |
Sme2.5_03681.1_g00006.1 | Upstream | Sme2.5_03681.1 | 30627 | T | T | C | C |
Sme2.5_04837.1_g00004.1 | Upstream | Sme2.5_04837.1 | 27375 | C | C | A | A |
Sme2.5_05759.1_g00003.1 | Upstream | Sme2.5_05759.1 | 37206 | T | C | T | C |
Sme2.5_06718.1_g00002.1 | Upstream | Sme2.5_06718.1 | 26954 | C | T | C | T |
Sme2.5_11788.1_g00001.1 | Upstream | Sme2.5_11788.1 | 5140 | C | A | C | A |
Sme2.5_00183.1_g00012.1 | Upstream | Sme2.5_00183.1 | 105933 | AT | AT | A | A |
Sme2.5_00339.1_g00009.1 | Upstream | Sme2.5_00339.1 | 93173 | T | TTTCAATAG | T | TTTCAATAG |
Sme2.5_00339.1_g00009.1 | Upstream | Sme2.5_00339.1 | 93189 | A | – | A | – |
Sme2.5_01232.1_g00001.1 | Upstream | Sme2.5_01232.1 | 1903 | AA | – | AA | – |
Sme2.5_01232.1_g00003.1 | Upstream | Sme2.5_01232.1 | 11791 | C | CGTT | C | CGTT |
Sme2.5_01232.1_g00004.1 | Upstream | Sme2.5_01232.1 | 11791 | C | CGTT | C | CGTT |
Sme2.5_01314.1_g00006.1 | Intron | Sme2.5_01314.1 | 38687 | A | A | – | – |
Sme2.5_01656.1_g00015.1 | Upstream | Sme2.5_01656.1 | 115606 | G | G | – | – |
Sme2.5_04572.1_g00005.1 | Upstream | Sme2.5_04572.1 | 38291 | – | – | A | A |
Sme2.5_09964.1_g00003.1 | Upstream | Sme2.5_09964.1 | 10606 | T | – | T | – |
Sme2.5_10056.1_g00002.1 | Upstream | Sme2.5_10056.1 | 20631 | ACA | – | ACA | – |
