Fig. 4
From: Accurate, scalable and integrative haplotype estimation
Phasing performance on high-coverage sequence data (GIAB). a Switch error rates with 95% binomial confidence intervals for each combination tested of sequencing reads and haplotype scaffold. b Same information than in a measured only at variants with minor allele frequency (MAF) above 1%. c Switch error rates measured only at variants belonging to phase sets (i.e., haplotype assembly) before (squares) and after (triangles) refinement by SHAPEIT4. Results are shown here assuming 0.01% error rate in the phase sets. Source data are provided as a Source Data file.
