Table 2 Key resources table

From: Cellular and genetic mechanisms that shape the development and evolution of tail vertebral proportion in mice and jerboas

Reagent/Resource	Source	Identifier
Chemicals, peptides, etc
Alcian 8GX certified by Biological Stain Commission	Sigma-Aldrich	Cat# A3157
Alizarin red S	Sigma-Aldrich	Cat# A5533
OCT compound	Tissue-Tek	Ref# 4583
Proteinase K	Qiagen	Cat# 19131
MyTaq Red PCR mix	Bioline	Cat# BIO-25047
Calcein	Sigma-Aldrich	Cat# C0875
Eosin-Y	Thermo scientific	Cat# 201931000
Hematoxylin	Sigma-Aldrich	Cat# GHS132
CryoJane tape-transfer system	Leica
Tape windows	Leica	Cat# 39475214
Solution A	Leica	Cat# 39475270
Solution B	Leica	Cat# 39475272
Fluoromount-G mounting medium	Invitrogen	Cat# 00-4958-02
Bioworld epitope unmasking buffer	Fisher scientific	Cat# 50-199-077
NPR3 anti-Rabbit polyclonal antibody	Invitrogen	Cat# PA5-96947
Alexa Fluor 594 Goat Anti-Rabbit IgG (H&L)	Invitrogen	Cat# ab150080
DAPI	Invitrogen	Cat# D1306
Critical commercial assays
Click-iT^TM EdU Kit, Alexa Fluor 647	Invitrogen	Cat# C10340
RNeasy Micro Kit	Qiagen	Cat# 74004
QIAshredder	Qiagen	Cat# 79656
Experimental models: Organisms/strains
Mus musculus (CD-1 Strain)	Charles River Labs	Strain Code: 022
Mus musculus (C57BL/6 Strain)	Charles River Labs	Strain Code: 027
Mus musculus Npr3^−/−	Olgin Lab, UCSF	MGI:2158355
Jaculus jaculus	UCSD Cooper Lab
Oligonucleotides
NPR3 primer Forward	3′ CACAAGGACACGGAATACTC 53′
NPR3 primer Reverse	3′ CTTGGATGTAGCGCACTATGTC 53′
NPR3 primer Neo Forward	3′ ACGCGTCACCTTAATATGCG 53′
Software and algorithms
FIJI⁹⁷	https://imagej.net/software/fiji/
InteredgeDistance Macro for FIJI	Santosh Patnaik
DataViewer	Bruker
DESeq2⁴⁵	https://github.com/thelovelab/DESeq2
STAR¹⁰⁰	https://github.com/alexdobin/STAR
TOGA⁴⁴	https://github.com/hillerlab/TOGA
CutAdapt⁹⁸	https://github.com/marcelm/cutadapt
FastQC⁹⁹	https://github.com/s-andrews/FastQC
Trim Galore	https://github.com/FelixKrueger/TrimGalore
R packages used in analysis
ggplot2	https://github.com/tidyverse/ggplot2
dplyr	https://github.com/tidyverse/dplyr
Plotly	https://github.com/plotly
clusterProfiler⁴⁷	https://github.com/YuLab-SMU/clusterProfiler
Hrbrthemes version 0.8.7	https://github.com/hrbrmstr/hrbrthemes
Paletteer version 1.3.0	https://github.com/EmilHvitfeldt/paletteer
BiocManager version 1.30.25	https://github.com/Bioconductor/BiocManager
GeneOverlap¹⁰¹ version 1.40.0	https://github.com/shenlab-sinai/GeneOverlap
gprofiler2 version 0.2.3	https://github.com/egonw/r-gprofiler2
Tidyr version 1.3.1	https://github.com/tidyverse/tidyr
RColorBrewer version 1.1-3	https://github.com/cran/RColorBrewer
Viridis version 0.6.5	https://github.com/sjmgarnier/viridis
Reshape2	https://github.com/hadley/reshape
Graphpad Prism software
Adobe Creative Cloud (Illustrator and Photoshop)

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Table 2 Key resources table

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