Table 2 Bacterial dynamics in the two inoculated (1A and 1B) and control piles (2A and 2B) as revealed by PCR-DGGE analysis during the composting process.

From: Effect of inoculated azotobacteria and Phanerochaete chrysosporium on the composting of olive pomace: Microbial community dynamics and phenols evolution

Experimental pile

Sampling time (day)

Acetobacter nitrogenifigens

Acetohalobium arabaticum

Acinetobacter gandensis

Acinetobacter radioresistens

Acinetobacter variabilis

Actimicrobium antarcticum

Blastochloris viridis

Ferrovibrio denitrificans

Gluconobacter albidus

Luteimonas terricola

Nitrosomonas communis

Novispirillum itersonii

Novosphingobium acidiphilum

Paracoccus kocurii

Paracoccus laeviglucosivorans

Pseudomonas guguanensis

Pseudorhodoplanes sinuspersici

Pseudoxanthomonas suwonensis

Qingshengfania soli

Reyranella soli

Rhizobium endolithicum

Rhodoligotrophos jinshengii

Rhodothalassium salexigens

Swingsia samuiensis

1A

t0

  

   

          

   

t7

  

           

    

   

t23

 

   

        

  

     

t28

                 

      

t36

               

 

      

t44

      

        

 

      

t65

       

 

 

  

     

t95

       

 

 

  

     

t113

         

 

   

   

1B

t0

  

   

          

   

t7

  

           

    

   

t23

 

   

        

  

      

t28

               

 

      

t36

                 

      

t44

      

          

      

t65

       

 

 

  

     

t95

       

 

 

  

     

t113

         

 

   

   

2A

t0

  

   

   

      

 

 

t7

  

           

       

t23

 

   

        

  

      

t28

                 

      

t36

               

 

      

t44

      

          

      

t65

       

 

 

  

     

t95

       

 

 

  

     

t113

         

 

   

   

2B

t0

  

   

   

      

 

 

t7

 

  

        

  

 

   

t23

 

   

        

  

      

t28

               

 

      

t36

                 

      

t44

      

          

      

t65

       

 

 

  

     

t95

       

 

 

  

     

t113

         

 

   

   
  1. DGGE bands resulting from the analysis of the DNA extracted directly from samples and showing >97% of similarity with the sequences of the closest relatives found by a BLAST search in the GenBank database.
  2. DGGE bands resulting from the analysis of the DNA extracted directly from samples and showing ˂ 97% of similarity with the sequences of the closest relatives found by a BLAST search in the GenBank database
  3. 1A and 1B: experimental piles inoculated with azotobacteria and spores of Phanerochaete chrysosporium; 2A and 2B: control piles.