Table 4 Interactions (hydrogen bonding and others) of pectin with different PDBs.

From: Characterization, biological evaluation and molecular docking of mulberry fruit pectin

PDB

H-bonds

Miscellaneous with their distance (Å)

Classical with their distance (Å)

Non-classical with their distance (Å)

1E3G

GLN789

3.09

CYS852

2.98

  

ARG855

2.74

ARG846

2.26

  

SER851

2.01

LYS845

2.77

  

LYS847

3.13

    

GLU803

2.88

    

LYS845

2.71, 3.20, 2.05

    

ARG846

1.66, 2.74, 2.93

    

3T0C

ARG559

2.74

PRO597

3.04, 3.59

GLY595

2.06

PHE258

3.35

ARG559

2.64

VAL259

2.09

THR267

2.56

    

VAL283

3.15

    

ASP293

2.13

    

ASN288

1.89

    

TYR260

1.72

    

ARG287

2.23

    

ASN113

1.70, 2.82

    

5CZZ

GLU217

2.53

ARG51

2.85, 2.66

ARG56

2.30

GLY218

2.11

PRO220

3.03, 2.80

  

ARG54

2.09, 2.35

HIS62

2.47, 4.03

  

ARG47

2.70

    

ARG55

1.91, 2.87

    

ARG58

2.55

    

ARG209

2.58

    

6J7L

GLU183

3.06

VAL182

2.35, 3.02

  

LYS181

2.81

ALA164

2.61

  

ARG283

1.76

GLN163

3.35

  

GLN163

2.85

    

GLN352

2.60

    

ARG348

4.96, 2.28

    

ARG180

5.86, 2.69

    

ASP170

3.06

    

6V40

HIS8

2.20

SER11

2.96

  

SER10

2.20

SER10

2.42

  

ASN183

2.22

GLN181

3.33, 2.44

  

ALA182

3.14

    

GLU184

2.94, 2.67

    

GLN125

2.66

    

ARG180

3.14

    

5IBS

ASN200

2.68, 2.50

GLU185

2.24,

GLU185

2.24

HIS196

2.43, 3.04

HIS196

2.65

ARG5

1.66, 2.19

ASP192

2.72

ALA105

2.64

  

SER189

2.64

SER189

2.79, 2.64

  

ARG5

2.78, 2.98, 1.66

    

ASN103

2.81, 2.23, 2.60

    

GLU186

2.96, 2.88, 2.98

    

5ZSY

HIS14

2.32

GLN44

2.57

  

GLN44

3.03, 2.56

THR16

2.60

  

LYS41

2.59

HIS14

3.72, 2.90

  

ASP40

3.26, 2.60

    

LYS39

1.90, 2.39

    

ASN46

3.35

    

6GGB

ALA276

1.71

SER241

2.75

SER241

2.33

Back to article page