Table 1 Selected differentially expressed genes in smxl4 relative to Samkwang at the booting stage and heading stage.

From: CRISPR/Cas9-mediated mutagenesis of SMXL4 alters plant height and yield-related traits in rice (cv. Samkwang)

Gene ID

Gene Symbol

Description

Log2FC

BT

HD

Os01g0293000

OsSAMS3, OsSAMS1

S-adenosyl-l-methionine synthetase, Histone H3K4me3 and DNA methylation

5.42

3.79

Os03g0347900

OsTPS4

Terpenoid synthase domain containing protein

2.85

2.28

Os05g0527700

 

UDP-glucuronosyl/UDP-glucosyltransferase family protein

7.59

8.72

Os06g0330100

PID3, Pi25

Blast resistance protein

9.02

8.19

Os07g0442800

OsJAUP1

Regulation of jasmonate biosynthesis and signalling, Promotion of root development and multi-stress tolerance

10.37

12.33

Os07g0539100

OsBGL3, OsGns11

Beta-glucanase 3

5.00

4.72

Os07g0574200

OsSUMO5

Ubiquitin supergroup domain containing protein

3.95

3.24

Os07g0635300

 

Similar to Cytochrome P450.

4.81

4.20

Os08g0345500

OsCSLD3

Similar to Cellulose synthase-like protein D3

4.24

3.88

Os08g0409900

 

Major facilitator superfamily protein

7.41

8.44

Os09g0456900

 

Nucleic acid-binding, OB-fold domain containing protein

8.15

9.12

Os10g0145000

OsFbox535, OsFBX371

Cyclin-like F-box domain containing protein

3.21

3.70

Os10g0409400

OsBURP16, OsRD22

beta subunit of polygalacturonase 1

5.61

5.41

Os02g0202200

OsSPX2

SPX domain-containing protein, Pi-dependent inhibition of phosphate starvation responses

-3.04

-2.56

  1. FC: fold change.