Abstract
Genetic studies have provided evidence for an autism susceptibility locus (AUTS1) on chromosome 7q. Screening for mutations in six genes mapping to 7q, CUTL1, SRPK2, SYPL, LAMB1, NRCAM and PTPRZ1 in 48 unrelated individuals with autism led to the identification of several new coding variants in the genes CUTL1, LAMB1 and PTPRZ1. Analysis of genetic variants provided evidence for association with autism for one of the new missense changes identified in LAMB1; this effect was stronger in a subgroup of affected male sibling pair families, implying a possible specific sex-related effect for this variant. Association was also detected for several polymorphisms in the promoter and untranslated region of NRCAM, suggesting that alterations in expression of this gene may be linked to autism susceptibility.
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References
Volkmar FR, Lord C, Bailey A, Schultz RT, Klin A : Autism and pervasive developmental disorders. J Child Psychol Psychiatry 2004; 45: 135–170.
Fombonne E : The prevalence of autism. JAMA 2003; 289: 87–89.
Smalley SL, Asarnow RF, Spence MA : Autism and genetics. A decade of research. Arch Gen Psychiatry 1988; 45: 953–961.
Fombonne E : The epidemiology of autism: a review. Psychol Med 1999; 29: 769–786.
Chakrabarti S, Fombonne E : Pervasive developmental disorders in preschool children. JAMA 2001; 285: 3093–3099.
Bailey A, Luthert P, Bolton P, Le Couteur A, Rutter M, Harding B : Autism and megalencephaly. Lancet 1993; 341: 1225–1226.
Bolton PF, Roobol M, Allsopp L, Pickles A : Association between idiopathic infantile macrocephaly and autism spectrum disorders. Lancet 2001; 358: 726–727.
Bauman ML : Brief report: neuroanatomic observations of the brain in pervasive developmental disorders. J Autism Dev Disord 1996; 26: 199–203.
Bailey A, Luthert P, Dean A et al: A clinicopathological study of autism. Brain 1998; 121 (Part 5): 889–905.
Ritvo ER, Freeman BJ, Scheibel AB et al: Lower Purkinje cell counts in the cerebella of four autistic subjects: initial findings of the UCLA-NSAC Autopsy Research Report. Am J Psychiatry 1986; 143: 862–866.
Folstein S, Rutter M : Infantile autism: a genetic study of 21 twin pairs. J Child Psychol Psychiatry 1977; 18: 297–321.
Bailey A, Le Couteur A, Gottesman I et al: Autism as a strongly genetic disorder: evidence from a British twin study. Psychol Med 1995; 25: 63–77.
Bolton P, Macdonald H, Pickles A et al: A case–control family history study of autism. J Child Psychol Psychiatry 1994; 35: 877–900.
Pickles A, Bolton P, Macdonald H et al: Latent-class analysis of recurrence risks for complex phenotypes with selection and measurement error: a twin and family history study of autism. Am J Hum Genet 1995; 57: 717–726.
Folstein SE, Rosen-Sheidley B : Genetics of autism: complex aetiology for a heterogeneous disorder. Nat Rev Genet 2001; 2: 943–955.
Jack J, Dorsett D, Delotto Y, Liu S : Expression of the cut locus in the Drosophila wing margin is required for cell type specification and is regulated by a distant enhancer. Development 1991; 113: 735–747.
Superti-Furga G, Barberis A, Schreiber E, Busslinger M : The protein CDP, but not CP1, footprints on the CCAAT region of the g-globulin gene in unfractionated B-cell extracts. Biochim Biophys Acta 1989; 1007: 237–242.
Gillingham AK, Pfeifer AC, Munro S : CASP, the alternatively spliced product of the gene encoding the CCAAT-displacement protein transcription factor, is a Golgi membrane protein related to giantin. Mol Biol Cell 2002; 13: 3761–3774.
Wang HY, Lin W, Dyck JA et al: SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells. J Cell Biol 1998; 140: 737–750.
Carter AS, Volkmar FR, Sparrow SS et al: The Vineland Adaptive Behavior Scales: supplementary norms for individuals with autism. J Autism Dev Disord 1998; 28: 287–302.
Gincel D, Shoshan-Barmatz V : The synaptic vesicle protein synaptophysin: purification and characterization of its channel activity. Biophys J 2002; 83: 3223–3229.
Pikkarainen T, Eddy R, Fukushima Y et al: Human laminin B1 chain. A multidomain protein with gene (LAMB1) locus in the q22 region of chromosome 7. J Biol Chem 1987; 262: 10454–10462.
Powell SK, Kleinman HK : Neuronal laminins and their cellular receptors. Int J Biochem Cell Biol 1997; 29: 401–414.
Grumet M : Nr-CAM: a cell adhesion molecule with ligand and receptor functions. Cell Tissue Res 1997; 290: 423–428.
Hoffman KB : The relationship between adhesion molecules and neuronal plasticity. Cell Mol Neurobiol 1998; 18: 461–475.
Levy JB, Canoll PD, Silvennoinen O et al: The cloning of a receptor-type protein tyrosine phosphatase expressed in the central nervous system. J Biol Chem 1993; 268: 10573–10581.
IMGSACa: A genomewide screen for autism: strong evidence for linkage to chromosomes 2q, 7q, and 16p. Am J Hum Genet 2001; 69: 570–581.
Lord C, Rutter M, Le Couteur A : Autism Diagnostic Interview-Revised: a revised version of a diagnostic interview for caregivers of individuals with possible pervasive developmental disorders. J Autism Dev Disord 1994; 24: 659–685.
Sparrow S, Balla D, Cicchetti D : Vineland Adaptive Behaviour Scales. Minn: Pines C, 1984.
Lord C, Risi S, Lambrecht L et al: The autism diagnostic observation schedule-generic: a standard measure of social and communication deficits associated with the spectrum of autism. J Autism Dev Disord 2000; 30: 205–223.
Klauck SM, Poustka F, Benner A, Lesch KP, Poustka A : Serotonin transporter (5-HTT) gene variants associated with autism? Hum Mol Genet 1997; 6: 2233–2238.
Rong Zeng W, Soucie E, Sung Moon N et al: Exon/intron structure and alternative transcripts of the CUTL1 gene. Gene 2000; 241: 75–85.
IMGSAC: A full genome screen for autism with evidence for linkage to a region on chromosome 7q. Hum Mol Genet 1998; 7: 571–578.
Bonora E, Bacchelli E, Levy ER et al: Mutation screening and imprinting analysis of four candidate genes for autism in the 7q32 region. Mol Psychiatry 2002; 7: 289–301.
Ramensky V, Bork P, Sunyaev S : Human non-synonymous SNPs: server and survey. Nucleic Acids Res 2002; 30: 3894–3900.
Bonora E, Beyer KS, Lamb JA et al: Analysis of reelin as a candidate gene for autism. Mol Psychiatry 2003; 8: 885–892.
O'Connell JR, Weeks DE : PedCheck: a program for identification of genotype incompatibilities in linkage analysis. Am J Hum Genet 1998; 63: 259–266.
Douglas JA, Boehnke M, Lange K : A multipoint method for detecting genotyping errors and mutations in sibling-pair linkage data. Am J Hum Genet 2000; 66: 1287–1297.
Spielman RS, McGinnis RE, Ewens WJ : Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM). Am J Hum Genet 1993; 52: 506–516.
Hauser ER, Boehnke M, Guo SW, Risch N : Affected-sib-pair interval mapping and exclusion for complex genetic traits: sampling considerations. Genet Epidemiol 1996; 13: 117–137.
Moffatt MF, Traherne JA, Abecasis GR, Cookson WO : Single nucleotide polymorphism and linkage disequilibrium within the TCR alpha/delta locus. Hum Mol Genet 2000; 9: 1011–1019.
Lewontin RC : On measures of gametic disequilibrium. Genetics 1988; 120: 849–852.
Abecasis GR, Cherny SS, Cookson WO, Cardon LR : Merlin – rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet 2002; 30: 97–101.
Bailey A, Palferman S, Heavey L, Le Couteur A : Autism: the phenotype in relatives. J Autism Dev Disord 1998; 28: 369–392.
Hutcheson HB, Olson LM, Bradford Y et al: Examination of NRCAM, LRRN3, KIAA0716, and LAMB1 as autism candidate genes. BMC Med Genet 2004; 5: 12.
Xi T, Jones IM, Mohrenweiser HW : Many amino acid substitution variants identified in DNA repair genes during human population screenings are predicted to impact protein function. Genomics 2004; 83: 970–979.
Tabor HK, Risch NJ, Myers RM : OPINION: Candidate-gene approaches for studying complex genetic traits: practical considerations. Nat Rev Genet 2002; 3: 391–397.
Pritchard JK : Are rare variants responsible for susceptibility to complex diseases? Am J Hum Genet 2001; 69: 124–137.
Reich DE, Schaffner SF, Daly MJ et al: Human genome sequence variation and the influence of gene history, mutation and recombination. Nat Genet 2002; 32: 135–142.
Roberts SB, Mclean CJ, Neale MC, Eaves LJ, Kendler KS : Replication of linkage studies of complex traits: an examination of variation in location estimates. Am J Hum Gene 1999; 65: 876–884.
Faivre-Sarrailh C, Falk J, Pollerberg E, Schachner M, Rougon G : NrCAM, cerebellar granule cell receptor for the neuronal adhesion molecule F3, displays an actin-dependent mobility in growth cones. J Cell Sci 1999; 112 (Part 18): 3015–3027.
Horikawa Y, Oda N, Cox NJ et al: Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus. Nat Genet 2000; 26: 163–175.
Schaid DJ : Transmission disequilibrium, family controls, and great expectations. Am J Hum Genet 1998; 63: 935–941.
Clayton D, Jones H : Transmission/disequilibrium tests for extended marker haplotypes. Am J Hum Genet 1999; 65: 1161–1169.
Acknowledgements
We thank all the families who have participated in the study and the professionals who continue to make this study possible. We would like to thank John Broxholme for help in bioinformatic analysis, Lorne Lonie, Aaron Abbott and Rebecca Redhead for technical support, Clyde Francks, Silvia Paracchini, Angela Marlow, Yvonne Jones and Robert Esnouf for helpful discussions and critical comments. This study is funded in part by support from the UK Medical Research Council, The Wellcome Trust, BIOMED 2 (CT-97-2759), EC Fifth Framework (QLG2-CT-1999-0094), Telethon – Italy (GGP030227), the Janus Korczak Foundation, Deutsche Forschungsgemeinschaft, Fondation France Télécom, Conseil Régional Midi-Pyrénées, Danish Medical Research Council, Sofiefonden, the Beatrice Surovell Haskells Fond for Child Mental Health Research of Copenhagen, the Danish Natural Science Research Council (9802210), the National Institute of Child Health and Development (5-P01-HD-35482-02) and the National Institutes of Health (MO1 RR06022 GCRC NIH, NIH K05 MH01196, K02 MH01389). EB is funded by a University of Oxford Graduate Prize Studentship and APM is a Wellcome Trust Principal Research Fellow. AJB is the Cheryl and Reece Scott Professor of Psychiatry.
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Bonora, E., Lamb, J., Barnby, G. et al. Mutation screening and association analysis of six candidate genes for autism on chromosome 7q. Eur J Hum Genet 13, 198–207 (2005). https://doi.org/10.1038/sj.ejhg.5201315
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DOI: https://doi.org/10.1038/sj.ejhg.5201315
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