Abstract
Genetic mutations affecting mitochondrial fission and fusion proteins cause human neurological disorders, but are assumed to be well tolerated in yeast. The conserved mitochondrial fission protein Dnm1/Drp1 is required for normal mitochondrial division, but also promotes cell death in mammals and yeast. Fis1, an outer mitochondrial membrane-anchored receptor for Dnm1/Drp1, also can promote cell death in mammals, but appears to have prosurvival activity in yeast. Here we report that deletion of the FIS1 gene in yeast consistently results in acquisition of a secondary mutation that confers sensitivity to cell death. In several independently derived FIS1 knockouts, tiling arrays and genomic sequencing identified the secondary mutation as a premature termination in the same stress-response gene, WHI2. The WHI2 mutation rescues the mitochondrial respiratory defect (petite formation) caused by FIS1 deficiency, but also causes a failure to suppress cell growth during amino-acid deprivation. Thus, loss of Fis1 drives the selection for specific compensatory mutations that confer defective growth control and cell death regulation, characteristic of human tumor cells. The important long-term survival function of Fis1 that is compensated by WHI2 mutation appears to be independent of fission factor Dnm1/Drp1 and its adaptor Mdv1, but may be mediated through a second adaptor Caf4, as WHI2 is also mutated in a CAF4 knockout.
Similar content being viewed by others
Log in or create a free account to read this content
Gain free access to this article, as well as selected content from this journal and more on nature.com
or
Accession codes
Abbreviations
- CAF4 :
-
CCR4 associated factor
- CSH:
-
Cold Spring Harbor Laboratory Press
- G418R:
-
G418 resistant
- ME:
-
Methods in Enzymology
- SCD:
-
synthetic complete dextrose medium
- WHI2 :
-
whiskey 2
- YKO:
-
yeast knockout
References
Okamoto K, Shaw JM . Mitochondrial morphology and dynamics in yeast and multicellular eukaryotes. Annu Rev Genet 2005; 39: 503–536.
Hoppins S, Lackner L, Nunnari J . The machines that divide and fuse mitochondria. Annu Rev Biochem 2007; 76: 751–780.
Wells RC, Picton LK, Williams SC, Tan FJ, Hill RB . Direct binding of the dynamin-like Gtpase, Dnm1, to mitochondrial dynamics protein Fis1 is negatively regulated by the Fis1 N-terminal Arm. J Biol Chem 2007; 282: 33769–33775.
Zhang Y, Chan DC . Structural basis for recruitment of mitochondrial fission complexes by Fis1. Proc NatlAcad Sci USA 2007; 104: 18526–18530.
Li Z, Okamoto K, Hayashi Y, Sheng M . The importance of dendritic mitochondria in the morphogenesis and plasticity of spines and synapses. Cell 2004; 119: 873–887.
Li H, Chen Y, Jones AF, Sanger RH, Collis LP, Flannery R et al. Bcl-Xl Induces Drp1-dependent synapse formation in cultured hippocampal neurons. Proc Natl Acad Sci USA 2008; 105: 2169–2174.
Waterham HR, Koster J, van Roermund CW, Mooyer PA, Wanders RJ, Leonard JV . A lethal defect of mitochondrial and peroxisomal fission. N Engl J Med 2007; 356: 1736–1741.
Frank S, Gaume B, Bergmann-Leitner ES, Leitner WW, Robert EG, Catez F et al. The role of dynamin-related protein 1, a mediator of mitochondrial fission, in apoptosis. Dev Cell 2001; 1: 515–525.
Breckenridge DG, Stojanovic M, Marcellus RC, Shore GC . Caspase cleavage product of Bap31 induces mitochondrial fission through endoplasmic reticulum calcium signals, enhancing cytochrome C release to the cytosol. J Cell Biol 2003; 160: 1115–1127.
Fannjiang Y, Cheng WC, Lee SJ, Qi B, Pevsner J, McCaffery JM et al. Mitochondrial fission proteins regulate programmed cell death in yeast. Genes Dev 2004; 18: 2785–2797.
Jagasia R, Grote P, Westermann B, Conradt B . Drp-1-mediated mitochondrial fragmentation during Egl-1-induced cell death in C. elegans. Nature 2005; 433: 754–760.
Goyal G, Fell B, Sarin A, Youle RJ, Sriram V . Role of mitochondrial remodeling in programmed cell death in Drosophila melanogaster. Dev Cell 2007; 12: 807–816.
Cassidy-Stone A, Chipuk JE, Ingerman E, Song C, Yoo C, Kuwana T et al. Chemical inhibition of the mitochondrial division dynamin reveals its role in Bax/Bak-dependent mitochondrial outer membrane permeabilization. Dev Cell 2008; 14: 193–204.
Lee YJ, Jeong SY, Karbowski M, Smith CL, Youle RJ . Roles of the mammalian mitochondrial fission and fusion mediators Fis1, Drp1, and Opa1 in apoptosis. Mol Biol Cell 2004; 15: 5001–5011.
Bras M, Yuste VJ, Roue G, Barbier S, Sancho P, Virely C et al. Drp1 mediates caspase-independent type Iii cell death in normal and leukemic cells. Mol Cell Biol 2007; 27: 7073–7088.
James DI, Parone PA, Mattenberger Y, Martinou JC . Hfis1, a novel component of the mammalian mitochondrial fission machinery. J Biol Chem 2003; 278: 36373–36379.
Yu T, Fox RJ, Burwell LS, Yoon Y . Regulation of mitochondrial fission and apoptosis by the mitochondrial outer membrane protein Hfis1. J Cell Sci 2005; 118: 4141–4151.
Delivani P, Adrain C, Taylor RC, Duriez PJ, Martin SJ . Role for Ced-9 and Egl-1 as regulators of mitochondrial fission and fusion dynamics. Mol Cell 2006; 21: 761–773.
Barsoum MJ, Yuan H, Gerencser AA, Liot G, Kushnareva Y, Graber S et al. Nitric oxide-induced mitochondrial fission is regulated by dynamin-related Gtpases in neurons. EMBO J 2006; 25: 3900–3911.
Ivanovska I, Hardwick JM . Viruses activate a genetically conserved cell death pathway in a unicellular organism. J Cell Biol 2005; 170: 391–399.
Kitagaki H, Araki Y, Funato K, Shimoi H . Ethanol-induced death in yeast exhibits features of apoptosis mediated by mitochondrial fission pathway. FEBS Letts 2007; 581: 2935–2942.
Yoon YS, Yoon DS, Lim IK, Yoon SH, Chung HY, Rojo M et al. Formation of elongated giant mitochondria in Dfo-induced cellular senescence: involvement of enhanced fusion process through modulation of Fis1. J Cell Physiol 2006; 209: 468–480.
Kaida D, Yashiroda H, Toh-e A, Kikuchi Y . Yeast Whi2 and Psr1-phosphatase form a complex and regulate Stre-mediated gene expression. Genes Cells 2002; 7: 543–552.
Gorsich SW, Shaw JM . Importance of mitochondrial dynamics during meiosis and sporulation. Mol Biol Cell 2004; 15: 4369–4381.
Shoemaker DD, Lashkari DA, Morris D, Mittmann M, Davis RW . Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nat Genet 1996; 14: 450–456.
Burke D, Dawson D, Stearns T . Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual, 2000 edn. Cold Spring Harbor Press: Plainview, NY, 2000; xvii: 205.
Sherman F . Guide to yeast genetics and molecular biology, part B In: Guthrie C and Fink GR (eds). Methods in Enzymology 2002; 350, Elsevier: London and New York, pp 3–41.
Gresham D, Ruderfer DM, Pratt SC, Schacherer J, Dunham MJ, Botstein D et al. Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Science 2006; 311: 1932–1936.
Torres EM, Sokolsky T, Tucker CM, Chan LY, Boselli M, Dunham MJ et al. Effects of aneuploidy on cellular physiology and cell division in haploid yeast. Science 2007; 317: 916–924.
Cerveny KL, Jensen RE . The Wd-repeats of Net2p interact with Dnm1p and Fis1p to regulate division of mitochondria. Mol Biol Cell 2003; 14: 4126–4139.
Griffin EE, Graumann J, Chan DC . The Wd40 protein Caf4p is a component of the mitochondrial fission machinery and recruits Dnm1p to mitochondria. J Cell Biol 2005; 170: 237–248.
Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature 2002; 418: 387–391.
Hughes TR, Roberts CJ, Dai H, Jones AR, Meyer MR, Slade D et al. Widespread aneuploidy revealed by DNA microarray expression profiling. Nat Genet 2000; 25: 333–337.
Pan X, Yuan DS, Ooi SL, Wang X, Sookhai-Mahadeo S, Meluh P et al. Dslam analysis of genome-wide genetic interactions in Saccharomyces cerevisiae. Methods (San Diego, Calif) 2007; 41: 206–221.
Sudbery PE, Goodey AR, Carter BL . Genes which control cell proliferation in the yeast Saccharomyces cerevisiae. Nature 1980; 288: 401–404.
Radcliffe P, Trevethick J, Tyers M, Sudbery P . Deregulation of Cln1 and Cln2 in the Saccharomyces cerevisiae Whi2 mutant. Yeast (Chichester, England) 1997; 13: 707–715.
Lee S, Jeong SY, Lim WC, Kim S, Park YY, Sun X et al. Mitochondrial fission and fusion mediators, Hfis1 and Opa1, modulate cellular senescence. J Biol Chem 2007; 282: 22977–22983.
Deutschbauer AM, Williams RM, Chu AM, Davis RW . Parallel phenotypic analysis of sporulation and postgermination growth in saccharomyces cerevisiae. Proc Natl Acad Sci USA 2002; 99: 15530–15535.
Marston AL, Tham WH, Shah H, Amon A . A genome-wide screen identifies genes required for centromeric cohesion. Science 2004; 303: 1367–1370.
Zhao R, Davey M, Hsu YC, Kaplanek P, Tong A, Parsons AB et al. Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the Hsp90 chaperone. Cell 2005; 120: 715–727.
Acknowledgements
We thank Jef D Boeke and Xuewen Pan for helpful discussions and reagents. This work was supported by National Institutes of Health grants RO1 GM077875 (JMH) and GM071508 (MJD).
Author information
Authors and Affiliations
Corresponding author
Additional information
Edited by R Youle
Supplementary Information accompanies the paper on Cell Death and Differentiation website (http://www.nature.com/cdd)
Supplementary information
Rights and permissions
About this article
Cite this article
Cheng, WC., Teng, X., Park, H. et al. Fis1 deficiency selects for compensatory mutations responsible for cell death and growth control defects. Cell Death Differ 15, 1838–1846 (2008). https://doi.org/10.1038/cdd.2008.117
Received:
Revised:
Accepted:
Published:
Issue date:
DOI: https://doi.org/10.1038/cdd.2008.117
Keywords
This article is cited by
-
Whi2: a new player in amino acid sensing
Current Genetics (2019)
-
Recurrent background mutations in WHI2 impair proteostasis and degradation of misfolded cytosolic proteins in Saccharomyces cerevisiae
Scientific Reports (2017)
-
Gene-dependent cell death in yeast
Cell Death & Disease (2011)
-
Apoptosis in yeast: triggers, pathways, subroutines
Cell Death & Differentiation (2010)