Abstract
E3 ubiquitin ligases target a growing number of pro- and anti-apoptotic proteins, including tumour suppressor p53, caspases, and the Bcl-2 family. The core apoptosis pathway is well conserved between mammals and Caenorhabditis elegans, but the extent to which ubiquitin ligases regulate apoptotic cell death is not known. To investigate the role of E3 ligases in apoptosis, we inhibited 108 of the 165 predicted E3 ubiquitin ligase genes by RNA interference and quantified apoptosis in the C. elegans germline after genotoxic stress. From this screen, we identified the homologous to E6-associated protein C terminus-domain E3 ligase EEL-1 as a positive regulator of apoptosis. Intriguingly, the human homologue of EEL-1, Huwe1/ARF-BP1/Mule/HectH9, has been reported to possess both pro- and anti-apoptotic functions through its ability to stimulate Mcl-1 and p53 degradation, respectively. Here, we demonstrate that eel-1 is required to promote DNA damage-induced germ cell apoptosis, but does not have a role in physiological germ cell apoptosis or developmental apoptosis in somatic tissue. Furthermore, eel-1 acts in parallel to the p53-like gene cep-1 and intersects the core apoptosis pathway upstream of the Bcl-2/Mcl-1 orthologue ced-9. Although ee1-1 mutants exhibit hypersensitivity to genotoxic stress they do not appear to be defective in DNA repair, suggesting a distinct role for EEL-1 in promoting damage-induced apoptosis in the germline.
Similar content being viewed by others
Log in or create a free account to read this content
Gain free access to this article, as well as selected content from this journal and more on nature.com
or
Abbreviations
- HECT:
-
homologous to E6-associated protein C terminus
- RING:
-
really interesting new gene
- PCD:
-
programmed cell death
- Mdm2:
-
murine double minute clone 2 oncoprotein
- IAP:
-
inhibitor of apoptosis protein
- SCF:
-
Skp-Cullin-F-box
- IR:
-
ionizing radiation
- NGM:
-
nematode growth media
- RNAi:
-
RNA interference
- HU:
-
hydroxyurea
- IPTG:
-
isopropyl-β-D-thiogalactopyranoside
References
Pickart CM . Mechanisms underlying ubiquitination. Annu Rev Biochem 2001; 70: 503–533.
Brooks CL, Gu W . p53 ubiquitination: Mdm2 and beyond. Mol Cell 2006; 21: 307–315.
Dimmeler S, Breitschopf K, Haendeler J, Zeiher AM . Dephosphorylation targets Bcl-2 for ubiquitin-dependent degradation: a link between the apoptosome and the proteasome pathway. J Exp Med 1999; 189: 1815–1822.
Li B, Dou QP . Bax degradation by the ubiquitin/proteasome-dependent pathway: involvement in tumor survival and progression. Proc Natl Acad Sci USA 2000; 97: 3850–3855.
Marshansky V, Wang X, Bertrand R, Luo H, Duguid W, Chinnadurai G et al. Proteasomes modulate balance among proapoptotic and antiapoptotic Bcl-2 family members and compromise functioning of the electron transport chain in leukemic cells. J Immunol 2001; 166: 3130–3142.
Yang Y, Fang S, Jensen JP, Weissman AM, Ashwell JD . Ubiquitin protein ligase activity of IAPs and their degradation in proteasomes in response to apoptotic stimuli. Science 2000; 288: 874–877.
Zhong Q, Gao W, Du F, Wang X . Mule/ARF-BP1, a BH3-only E3 ubiquitin ligase, catalyzes the polyubiquitination of Mcl-1 and regulates apoptosis. Cell 2005; 121: 1085–1095.
Conradt B, Xue D . Programmed cell death. WormBook 2005; 6: 1–13.
Kipreos ET . Ubiquitin-mediated pathways in C. elegans. WormBook 2005: 1–24.
Derry WB, Putzke AP, Rothman JH . Caenorhabditis elegans p53: role in apoptosis, meiosis, and stress resistance. Science 2001; 294: 591–595.
Schumacher B, Hofmann K, Boulton S, Gartner A . The C. elegans homolog of the p53 tumor suppressor is required for DNA damage-induced apoptosis. Curr Biol 2001; 11: 1722–1727.
Ahmed S, Alpi A, Hengartner MO, Gartner A . C. elegans RAD-5/CLK-2 defines a new DNA damage checkpoint protein. Curr Biol 2001; 11: 1934–1944.
Gartner A, Milstein S, Ahmed S, Hodgkin J, Hengartner MO . A conserved checkpoint pathway mediates DNA damage-induced apoptosis and cell cycle arrest in C. elegans. Mol Cell 2000; 5: 435–443.
Gao MX, Liao EH, Yu B, Wang Y, Zhen M, Derry WB . The SCFFSN-1 ubiquitin ligase controls germline apoptosis through CEP-1/p53 in C. elegans. Cell Death Differ 2008; 15: 1054–1062.
Peschiaroli A, Scialpi F, Bernassola F, Pagano M, Melino G . The F-box protein FBXO45 promotes the proteasome-dependent degradation of p73. Oncogene 2009; 28: 3157–3166.
Astin JW, O’Neil NJ, Kuwabara PE . Nucleotide excision repair and the degradation of RNA pol II by the Caenorhabditis elegans XPA and Rsp5 orthologues, RAD-3 and WWP-1. DNA Repair (Amst) 2008; 7: 267–280.
Laine A, Ronai Z . Regulation of p53 localization and transcription by the HECT domain E3 ligase WWP1. Oncogene 2007; 26: 1477–1483.
Li Y, Zhou Z, Chen C . WW domain-containing E3 ubiquitin protein ligase 1 targets p63 transcription factor for ubiquitin-mediated proteasomal degradation and regulates apoptosis. Cell Death Differ 2008; 15: 1941–1951.
Gumienny TL, Lambie E, Hartwieg E, Horvitz HR, Hengartner MO . Genetic control of programmed cell death in the Caenorhabditis elegans hermaphrodite germline. Development 1999; 126: 1011–1022.
Hedgecock EM, Sulston JE, Thomson JN . Mutations affecting programmed cell deaths in the nematode Caenorhabditis elegans. Science 1983; 220: 1277–1279.
van Haaften G, Romeijn R, Pothof J, Koole W, Mullenders LH, Pastink A et al. Identification of conserved pathways of DNA-damage response and radiation protection by genome-wide RNAi. Curr Biol 2006; 16: 1344–1350.
Parsons JL, Tait PS, Finch D, Dianova II, Edelmann MJ, Khoronenkova SV et al. Ubiquitin ligase ARF-BP1/Mule modulates base excision repair. EMBO J 2009; 28: 3207–3215.
Bailly AP, Freeman A, Hall J, Declais AC, Alpi A, Lilley DM et al. The Caenorhabditis elegans homolog of Gen1/Yen1 resolvases links DNA damage signaling to DNA double-strand break repair. PLoS Genet 2010; 6: e1001025.
Alpi A, Pasierbek P, Gartner A, Loidl J . Genetic and cytological characterization of the recombination protein RAD-51 in Caenorhabditis elegans. Chromosoma 2003; 112: 6–16.
Martin JS, Winkelmann N, Petalcorin MI, McIlwraith MJ, Boulton SJ . RAD-51-dependent and -independent roles of a Caenorhabditis elegans BRCA2-related protein during DNA double-strand break repair. Mol Cell Biol 2005; 25: 3127–3139.
Hengartner MO, Horvitz HR . C. elegans cell survival gene ced-9 encodes a functional homolog of the mammalian proto-oncogene bcl-2. Cell 1994; 76: 665–676.
Page BD, Diede SJ, Tenlen JR, Ferguson EL . EEL-1, a Hect E3 ubiquitin ligase, controls asymmetry and persistence of the SKN-1 transcription factor in the early C. elegans embryo. Development 2007; 134: 2303–2314.
Chen D, Kon N, Li M, Zhang W, Qin J, Gu W . ARF-BP1/Mule is a critical mediator of the ARF tumor suppressor. Cell 2005; 121: 1071–1083.
Hall JR, Kow E, Nevis KR, Lu CK, Luce KS, Zhong Q et al. Cdc6 stability is regulated by the Huwe1 ubiquitin ligase after DNA damage. Mol Biol Cell 2007; 18: 3340–3350.
Greiss S, Hall J, Ahmed S, Gartner A . C. elegans SIR-2.1 translocation is linked to a proapoptotic pathway parallel to cep-1/p53 during DNA damage-induced apoptosis. Genes Dev 2008; 22: 2831–2842.
Ito S, Greiss S, Gartner A, Derry WB . Cell-nonautonomous regulation of C. elegans germ cell death by kri-1. Curr Biol 20: 333–338.
Luo J, Shah S, Riabowol K, Mains PE . The Caenorhabditis elegans ing-3 gene regulates ionizing radiation-induced germ-cell apoptosis in a p53-associated pathway. Genetics 2009; 181: 473–482.
Schertel C, Conradt B . C. elegans orthologs of components of the RB tumor suppressor complex have distinct pro-apoptotic functions. Development 2007; 134: 3691–3701.
Derry WB, Bierings R, van Iersel M, Satkunendran T, Reinke V, Rothman JH . Regulation of developmental rate and germ cell proliferation in Caenorhabditis elegans by the p53 gene network. Cell Death Differ 2007; 14: 662–670.
Zahreddine H, Zhang H, Diogon M, Nagamatsu Y, Labouesse M . CRT-1/calreticulin and the E3 ligase EEL-1/HUWE1 control hemidesmosome maturation in C. elegans development. Curr Biol 2010; 20: 322–327.
Hofmann ER, Milstein S, Boulton SJ, Ye M, Hofmann JJ, Stergiou L et al. Caenorhabditis elegans HUS-1 is a DNA damage checkpoint protein required for genome stability and EGL-1-mediated apoptosis. Curr Biol 2002; 12: 1908–1918.
Nehme R, Conradt B . egl-1: a key activator of apoptotic cell death in C. elegans. Oncogene 2008; 27 (Suppl 1): S30–S40.
Akiyama T, Bouillet P, Miyazaki T, Kadono Y, Chikuda H, Chung UI et al. Regulation of osteoclast apoptosis by ubiquitylation of proapoptotic BH3-only Bcl-2 family member Bim. EMBO J 2003; 22: 6653–6664.
Brenner S . The genetics of Caenorhabditis elegans. Genetics 1974; 77: 71–94.
Quevedo C, Kaplan DR, Derry WB . AKT-1 regulates DNA-damage-induced germline apoptosis in C. elegans. Curr Biol 2007; 17: 286–292.
Acknowledgements
We thank the Caenorhabditis Genetics Center, which is funded by the National Institutes of Health Center for Research Resources for providing worm strains. We kindly thank H.R Horvitz (Massachusetts Institute of Technology) for providing the ced-9(n2812)/qC1 strain, B. Conradt and Stephane Rolland (Dartmouth University) for CED-9 antibody and assistance with the western blot protocol. This work was supported by a Canadian Institutes of Health Research award to W.B.D., Natural Sciences and Engineering Research Council of Canada Graduate Scholarship to A.R., and a Canadian Institutes of Health Strategic Training Fellow in the Excellence in Radiation Research for the 21st Century Program to M.L. We are grateful to A. Perrin and S. Ito for helpful input on the manuscript.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no conflict of interest.
Additional information
Edited by JP Medema
Supplementary Information accompanies the paper on Cell Death and Differentiation website
Supplementary information
Rights and permissions
About this article
Cite this article
Ross, A., Li, M., Yu, B. et al. The EEL-1 ubiquitin ligase promotes DNA damage-induced germ cell apoptosis in C. elegans. Cell Death Differ 18, 1140–1149 (2011). https://doi.org/10.1038/cdd.2010.180
Received:
Revised:
Accepted:
Published:
Issue date:
DOI: https://doi.org/10.1038/cdd.2010.180
Keywords
This article is cited by
-
BRAP-2 promotes DNA damage induced germline apoptosis in C. elegans through the regulation of SKN-1 and AKT-1
Cell Death & Differentiation (2018)
-
Pro-crossover factors regulate damage-dependent apoptosis in the Caenorhabditis elegans germ line
Cell Death & Differentiation (2013)
-
Noncanonical control of C. elegans germline apoptosis by the insulin/IGF-1 and Ras/MAPK signaling pathways
Cell Death & Differentiation (2013)