Abstract
Proteasome inhibitors induce cell death and are used in cancer therapy, but little is known about the relationship between proteasome impairment and cell death under normal physiological conditions. Here, we investigate the relationship between proteasome function and larval salivary gland cell death during development in Drosophila. Drosophila larval salivary gland cells undergo synchronized programmed cell death requiring both caspases and autophagy (Atg) genes during development. Here, we show that ubiquitin proteasome system (UPS) function is reduced during normal salivary gland cell death, and that ectopic proteasome impairment in salivary gland cells leads to early DNA fragmentation and salivary gland condensation in vivo. Shotgun proteomic analyses of purified dying salivary glands identified the UPS as the top category of proteins enriched, suggesting a possible compensatory induction of these factors to maintain proteolysis during cell death. We compared the proteome following ectopic proteasome impairment to the proteome during developmental cell death in salivary gland cells. Proteins that were enriched in both populations of cells were screened for their function in salivary gland degradation using RNAi knockdown. We identified several factors, including trol, a novel gene CG11880, and the cop9 signalsome component cop9 signalsome 6, as required for Drosophila larval salivary gland degradation.
Similar content being viewed by others
Log in or create a free account to read this content
Gain free access to this article, as well as selected content from this journal and more on nature.com
or
Abbreviations
- UPS:
-
ubiquitin proteasome system
- MS:
-
mass spectrometry
- CSN6:
-
cop9 signalsome 6
References
Lockshin RA, Williams CM . Programmed cell death-I. Cytology of degeneration in the intersegmental muscles of the pernyi silkmoth. J Insect Physiol 1965; 11: 123–133.
Danial NN, Korsmeyer SJ . Cell death: critical control points. Cell 2004; 116: 205–219.
Thompson CB . Apoptosis in the pathogenesis and treatment of disease. Science 1995; 267: 1456–1462.
Clarke PGH . Developmental cell death: morphological diversity and multiple mechanisms. Anat Embryol 1990; 181: 195–213.
Schweichel J-U, Merker H-J . The morphology of various types of cell death in prenatal tissues. Teratology 1973; 7: 253–266.
Ciechanover A . Proteolysis: from the lysosome to ubiquitin and the proteasome. Nat Rev Mol Cell Biol 2005; 6: 79–87.
Schwartz AL, Ciechanover A . The ubiquitin-proteasome pathway and pathogenesis of human diseases. Annu Rev Med 1999; 50: 57–74.
Wang J, Maldonado MA . The ubiquitin-proteasome system and its role in inflammatory and autoimmune diseases. Cell Mol Immunol 2006; 3: 255–261.
Drexler HC . Programmed cell death and the proteasome. Apoptosis 1998; 3: 1–7.
Sun XM, Butterworth M, MacFarlane M, Dubiel W, Ciechanover A, Cohen GM . Caspase activation inhibits proteasome function during apoptosis. Mol Cell 2004; 14: 81–93.
Adrain C, Creagh EM, Cullen SP, Martin SJ . Caspase-dependent inactivation of proteasome function during programmed cell death in Drosophila and man. J Biol Chem 2004; 279: 36923–36930.
Schwartz LM, Myer A, Kosz L, Engelstein M, Maier C . Activation of polyubiquitin gene expression during developmentally programmed cell death. Neuron 1990; 5: 411–419.
Jones ME, Haire MF, Kloetzel PM, Mykles DL, Schwartz LM . Changes in the structure and function of the multicatalytic proteinase (proteasome) during programmed cell death in the intersegmental muscles of the hawkmoth, Manduca sexta. Dev Biol 1995; 169: 436–447.
Dawson SP, Arnold JE, Mayer NJ, Reynolds SE, Billett MA, Gordon C et al. Developmental changes of the 26 S proteasome in abdominal intersegmental muscles of Manduca sexta during programmed cell death. J Biol Chem 1995; 270: 1850–1858.
Takayanagi K, Dawson S, Reynolds SE, Mayer RJ . Specific developmental changes in the regulatory subunits of the 26 S proteasome in intersegmental muscles preceding eclosion in Manduca sexta. Biochem Biophys Res Commun 1996; 228: 517–523.
Shinohara K, Tomioka M, Nakano H, Tone S, Ito H, Kawashima S . Apoptosis induction resulting from proteasome inhibition. Biochem J 1996; 317 (Part 2): 385–388.
Drexler HC . Activation of the cell death program by inhibition of proteasome function. Proc Natl Acad Sci USA 1997; 94: 855–860.
Henderson CJ, Aleo E, Fontanini A, Maestro R, Paroni G, Brancolini C . Caspase activation and apoptosis in response to proteasome inhibitors. Cell Death Differ 2005; 12: 1240–1254.
Hoeller D, Dikic I . Targeting the ubiquitin system in cancer therapy. Nature 2009; 458: 438–444.
Tobinai K . Proteasome inhibitor, bortezomib, for myeloma and lymphoma. Int J Clin Oncol 2007; 12: 318–326.
Adams J . The development of proteasome inhibitors as anticancer drugs. Cancer Cell 2004; 5: 417–421.
Ling YH, Liebes L, Jiang JD, Holland JF, Elliott PJ, Adams J et al. Mechanisms of proteasome inhibitor PS-341-induced G(2)-M-phase arrest and apoptosis in human non-small cell lung cancer cell lines. Clin Cancer Res 2003; 9: 1145–1154.
Meister S, Schubert U, Neubert K, Herrmann K, Burger R, Gramatzki M et al. Extensive immunoglobulin production sensitizes myeloma cells for proteasome inhibition. Cancer Res 2007; 67: 1783–1792.
Gu H, Chen X, Gao G, Dong H . Caspase-2 functions upstream of mitochondria in endoplasmic reticulum stress-induced apoptosis by bortezomib in human myeloma cells. Mol Cancer Ther 2008; 7: 2298–2307.
Berry DL, Baehrecke EH . Growth arrest and autophagy are required for salivary gland cell degradation in Drosophila. Cell 2007; 131: 1137–1148.
Lee C-Y, Baehrecke EH . Steroid regulation of autophagic programmed cell death during development. Development 2001; 128: 1443–1455.
Martin DN, Baehrecke EH . Caspases function in autophagic cell death in Drosophila. Development 2004; 131: 275–284.
Lee C-Y, Clough EA, Yellon P, Teslovich TM, Stephan DA, Baehrecke EH . Genome-wide analyses of steroid- and radiation-triggered programmed cell death in Drosophila. Curr Biol 2003; 13: 350–357.
Martin DN, Balgley B, Dutta S, Chen J, Rudnick P, Cranford J et al. Proteomic analysis of steroid-triggered autophagic programmed cell death during Drosophila development. Cell Death Differ 2007; 14: 916–923.
Lee CY, Wendel DP, Reid P, Lam G, Thummel CS, Baehrecke EH . E93 directs steroid-triggered programmed cell death in Drosophila. Mol Cell 2000; 6: 433–443.
Yao T-P, Forman BM, Jiang Z, Cherbas L, Chen JD, McKeown M et al. Functional ecdysone receptor is the product of EcR and ultraspiracle genes. Nature 1993; 366: 476–479.
Dantuma NP, Lindsten K, Glas R, Jellne M, Masucci MG . Short-lived green fluorescent proteins for quantifying ubiquitin/proteasome-dependent proteolysis in living cells. Nat Biotechnol 2000; 18: 538–543.
Bence NF, Bennett EJ, Kopito RR . Application and analysis of the GFPu family of ubiquitin-proteasome system reporters. Methods Enzymol 2005; 399: 481–490.
Pandey UB, Nie Z, Batlevi Y, McCray BA, Ritson GP, Nedelsky NB et al. HDAC6 rescues neurodegeneration and provides an essential link between autophagy and the UPS. Nature 2007; 447: 859–863.
Belote JM, Fortier E . Targeted expression of dominant negative proteasome mutants in Drosophila melanogaster. Genesis 2002; 34: 80–82.
Busch S, Schwier EU, Nahlik K, Bayram O, Helmstaedt K, Draht OW et al. An eight-subunit COP9 signalosome with an intact JAMM motif is required for fungal fruit body formation. Proc Natl Acad Sci USA 2007; 104: 8089–8094.
Serino G, Deng XW . The COP9 signalosome: regulating plant development through the control of proteolysis. Annu Rev Plant Biol 2003; 54: 165–182.
Su H, Huang W, Wang X . The COP9 signalosome negatively regulates proteasome proteolytic function and is essential to transcription. Int J Biochem Cell Biol 2009; 41: 615–624.
Elgendy M, Sheridan C, Brumatti G, Martin SJ . Oncogenic Ras-induced expression of Noxa and Beclin-1 promotes autophagic cell death and limits clonogenic survival. Mol Cell 2011; 42: 23–35.
Arntzen MØ, Thiede B . ApoptoProteomics an integrated database for analysis of proteomics data obtained from apoptotic cells. Mol Cell Proteomics 2012; 11, M111.010447.
Lindner JR, Hillman PR, Barrett AL, Jackson MC, Perry TL, Park Y et al. The Drosophila Perlecan gene trol regulates multiple signaling pathways in different developmental contexts. BMC Dev Biol 2007; 7: 121.
Wei N, Serino G, Deng XW . The COP9 signalosome: more than a protease. Trends Biochem Sci 2008; 33: 592–600.
Tomoda K, Yoneda-Kato N, Fukumoto A, Yamanaka S, Kato JY . Multiple functions of Jab1 are required for early embryonic development and growth potential in mice. J Biol Chem 2004; 279: 43013–43018.
Panattoni M, Sanvito F, Basso V, Doglioni C, Casorati G, Montini E et al. Targeted inactivation of the COP9 signalosome impairs multiple stages of T cell development. J Exp Med 2008; 205: 465–477.
Gao MX, Liao EH, Yu B, Wang Y, Zhen M, Derry WB . The SCF FSN-1 ubiquitin ligase controls germline apoptosis through CEP-1/p53 in C. elegans. Cell Death Differ 2008; 15: 1054–1062.
Hay BA, Wolff T, Rubin GM . Expression of baculovirus P35 prevents cell death in Drosophila. Development 1994; 120: 2121–2129.
Chen J, Balgley BM, DeVoe DL, Lee CS . Capillary isoelectric focusing-based multidimensional concentration/separation platform for proteome analysis. Anal Chem 2003; 75: 3145–3152.
Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM et al. Open mass spectrometry search algorithm. J Proteome Res 2004; 3: 958–964.
Muro I, Berry DL, Huh JR, Chen CH, Huang H, Yoo SJ et al. The Drosophila caspase Ice is important for many apoptotic cell deaths and for spermatid individualization, a nonapoptotic process. Development 2006; 133: 3305–3315.
Dutta S, Baehrecke EH . Warts is required for PI3K-regulated growth arrest, autophagy, and autophagic cell death in Drosophila. Curr Biol 2008; 18: 1466–1475.
Hochberg Y, Benjamini Y . More powerful procedures for multiple significance testing. Stat Med 1990; 9: 811–818.
Acknowledgements
We thank P Meier, the Bloomington Stock Center, and the VDRC for Drosophila strains. We thank K Simin for assistance with proteomics data analysis. This work was supported by the NIH grant GM079431 to EHB. EHB is an Ellison Medical Foundation Scholar and a member of the UMass DERC (DK32520).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no conflict of interest.
Additional information
Edited by RA Knight
Supplementary information accompanies the paper on Cell Death and Differentiation website
Rights and permissions
About this article
Cite this article
McPhee, C., Balgley, B., Nelson, C. et al. Identification of factors that function in Drosophila salivary gland cell death during development using proteomics. Cell Death Differ 20, 218–225 (2013). https://doi.org/10.1038/cdd.2012.110
Received:
Revised:
Accepted:
Published:
Issue date:
DOI: https://doi.org/10.1038/cdd.2012.110
Keywords
This article is cited by
-
Thioredoxin-80 protects against amyloid-beta pathology through autophagic-lysosomal pathway regulation
Molecular Psychiatry (2021)
-
Life, death and autophagy
Nature Cell Biology (2018)
-
Midgut morphological changes and autophagy during metamorphosis in sand flies
Cell and Tissue Research (2017)
-
Impaired proteasomal degradation enhances autophagy via hypoxia signaling in Drosophila
BMC Cell Biology (2013)


