Table 1 Sequences of primer pairs used for quantitative RT-PCR analysis, MassARRAY and (h)MeDIP

From: TET-mediated hydroxymethylcytosine at the Pparγ locus is required for initiation of adipogenic differentiation

Name

Use

Primer (5 ′–3′)a

Nono

 

F: TGCTCCTGTGCCACCTGGTACTC

  

R: CCGGAGCTGGACGGTTGAATGC

Pparγ

 

F: CCCTGGCAAAGCATTTGTAT

  

R: GAAACTGGCACCCTTGAAAA

Cebpα

RT-PCR

F: TGTGCGAGCACGAGACGTC

  

R: AACTCGTCGTTGAAGGCGG

Fabp4

 

F: TTCGATGAAATCACCGCAGA

  

R: AGGGCCCCGCCATCT

Cebpβ

 

F: GCAAGAGCCGCGACAAG

  

R: GGCTCGGGCAGCTGCTT

Pparγ

Bisulfite-treated PCR

F: aggaagagagTTTTGTTTTTATTTGTTTGTTTTGG

  

R: cagtaatacgactcactatagggagaaggctACTTATTTTTATCTCAAATCATCAACAAT

Cebpα

 

F: aggaagagagGATTTTATGGGGGAGTTAGAGTTTT

  

R: cagtaatacgactcactatagggagaaggctCCCAACAAACACCATCCTACTAAC

Fabp4

 

F: aggaagagagTTTTAATGTTAAGGTTTAAGAATGTGTGA

  

R: cagtaatacgactcactatagggagaaggctAACAAACAACCAAAAATTCCCACTA

Pparγ

(h)MeDIP

F: CCTGAATTTACCCGAGCTGA

  

R: TTATCTCGGAGGCGGTAAGA

  1. Abbreviations: F, forward; PPARγ, proliferator-activated receptor γ; qPCR, quantitative polymerase chain reaction; R, reverse.
  2. aLower case letters indicate tag sequence.