Supplementary Figure 1: xQuest/xProphet results manager.

The results manager is used as the central program for organizing and exploring xQuest/xProphet search results. Detailed documentation can be found following the link “How to use” (A). Different options are available to display and organize the individual search results (B). Individual experiments and definition files can be accessed from the table that displays the experiments (C). Experiments can be explored in the results viewer by clicking on “view” (D and Supplementary Figure 2).