Table 1 The major population of immune cells involved in neuroimmune interactions

From: Beyond the gut: decoding the gut–immune–brain axis in health and disease

Cell type

Location/Distribution

Specific markers/subtypes

Key functions

Ref

Microglia

CNS parenchyma

CD11b, F4/80, CX3CR1, IBA1, TREM119, P2RY12, Siglec-H

• Originate from the yolk sac during early development

• Play key roles in immune surveillance and sensing danger signals

• Engage in phagocytosis of neural progenitor cells and synaptic elements

• Provide neurotrophic support through factors such as IGF-1 and BDNF

• Respond to cytokines (e.g., IL-4, IFN-γ), enabling dynamic shifts in functional states

[67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89, 380]

Astrocytes

Throughout the CNS

GFAP, S100β, ALDH1L1

• Phagocytose apoptotic neurons and clear myelin debris

• Provide structural support and regulate neurotransmitters to maintain extracellular homeostasis

• Contribute to phagocytosis and overall debris clearance

• Secrete IL-33 to recruit microglia for synaptic remodeling

• Interact with vascular endothelial cells to help maintain BBB integrity

[92, 96, 97, 99, 104, 105]

Conventional T Cells

Dural/leptomeningeal regions, Choroid plexus, few in brain parenchyma

CD44, CD69, CD103

• Accumulate in the central nervous system (CNS) after birth

• Modulate neuronal function through cytokine signaling (e.g., IFN-γ, IL-4)

• Support the maturation and functional development of microglia

[10, 109,110,111, 114]

Regulatory T Cells (Tregs)

Dural/leptomeningeal regions, choroid plexus, and few in brain parenchyma

CTLA-4, ICOS, ST2,5-HT7

• Exhibit a tissue-resident phenotype, distinct from circulating Tregs

• Contribute to inflammation resolution and tissue repair by producing IL-10, TGF-β, AREG, and SPP1, which suppress inflammation and promote recovery

[10, 113, 114, 159, 160]

Gamma Delta T Cells

Predominantly in the dural meninges

High IL-17A production

• Accumulate early in the meninges

• Secrete high levels of IL-17A, modulating synaptic plasticity and influencing anxiety-like behaviors

[108, 112]

B Cells

Dural/leptomeningeal regions, choroid plexus, and few in brain parenchyma

Adults: Immature & B2 cells; Neonatal: B-1a cells

• Mediate local negative selection within the meninges

• Promote proliferation of oligodendrocyte precursor cells during neonatal development

[120,121,122,123]

Border-Associated Macrophages (BAMs)

CNS borders: meninges, choroid plexus, and perivascular spaces

Ms4a7, Ms4a6c, Tgfbi, Lyz2

• Involved in antigen presentation and immune clearance

• Regulate BBB permeability through NOX2.

[124,125,126,127,128,129,130,131,132,133, 179, 180]

Innate Lymphocytes (NK Cells & ILCs)

Dural/leptomeningeal regions, choroid plexus, and few in brain parenchyma

NK cells, ILC1s, ILC2s, few ILC3s

• Accumulate in the meninges after birth

• ILC2 produce IL-13 to regulate inhibitory synapse development

• ILC2 accumulation in the aged brain is associated with age-related cognitive function

[134,135,136,137]