Fig. 3: Deconvolving simulated ‘pseudobulk’ samples from five tissues.
From: Alleviating batch effects in cell type deconvolution with SCCAF-D
The heatmaps show the deconvolution results of PCCs on simulated bulk data from a pancreas, b lung, c PBMC, d brain and e spleen tissue, respectively. Each panel is a row of heatmaps. X axis shows the references, and Y axis shows simulated pseudobulk. ‘Optimised Ref’ labels the optimised reference data from SCCAF-D. Two-sided t test is used to calculate the p values. R: pearson correlation coefficient. Source data are provided as a Source Data file.
