Fig. 5: IGF2BP3 is highly expressed in LSCs/LICs and required for the maintenance of AML stemness. | Nature Communications

Fig. 5: IGF2BP3 is highly expressed in LSCs/LICs and required for the maintenance of AML stemness.

From: m6A/IGF2BP3-driven serine biosynthesis fuels AML stemness and metabolic vulnerability

Fig. 5

A Expression of IGF2BP3 mRNA in AML patient samples and healthy donors from the TNMplot database. Box plot, center line, median; box limits, upper and lower quartiles; whiskers, 1.5× interquartile range. n = 407 healthy samples; n = 151 AML samples. B Expression of IGF2BP3 in CD34+ and CD34- cells from BM of healthy donors (normal) or AML patients as detected by microarray (GSE30029). n = 31 CD34+ normal samples; n = 46 CD34+ AML samples; n = 44 CD34- AML samples. C Expression of IGF2BP3 in blast (LSC, non-engrafting) or LSC (LSC+, engrafting) cells from AML patients (GSE199452). n = 40 LSC samples; n = 70 LSC+ samples. D Experimental scheme for (EG). Patient-derived CD34+ cells were transduced with shNS or shRNAs targeting IGF2BP3 and subjected to different assays. EG Growth curves (E), percentages of Annexin V+ apoptotic cells (F), and colony numbers (G) of patient-derived CD34+ leukemia cells with or without IGF2BP3 KD. Bar = 200 μm. H The percentage of L-GMP population (CD45.2+Lin-c-kit+Sca1-CD34+CD16/32+) in BM of the primary BMT mice. n = 6 mice per group. I, J Statistics of the percentage of Annexin V+ (I) or Ki67+ (J) L-GMPs of mice in (H). n = 6 mice. K In vitro LDA assays using MA9-transduced HSPCs from Igf2bp3 WT and KO mice. Logarithmic plots show the percentage of nonresponding wells (those without any colonies) at different doses of cells seeded. The estimated LSC/LIC frequency is calculated by ELDA and shown. L, M In vitro LDA assays of mouse HSPCs co-transduced with MA9 plus shRNA targeting Igf2bp3 (L) or its target genes (M). N HSPCs collected from Igf2bp3 WT and HO mice were co-transduced with MA9 and target gene-overexpressing viruses and selected in methylcellulose medium with G418 and puromycin for 7 days before seeded for LDA assays. Mean ± SD values are shown. n = 2 biologically independent repeats in E, G while n = 3 biologically independent repeats in (F). Statistical analysis: Two-tailed student’s t-test (A, C, F, HJ); two-way ANOVA (B); One-sided Chi-squared test (KN). Source data are provided as a Source Data file.

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