Fig. 6: Cell heterogeneity revealed in a 50 μm human FFPE(Lung) tissue by snCED-seq. | Nature Communications

Fig. 6: Cell heterogeneity revealed in a 50 μm human FFPE(Lung) tissue by snCED-seq.

From: snCED-seq: high-fidelity cryogenic enzymatic dissociation of nuclei for single-nucleus RNA-seq of FFPE tissues

Fig. 6

a UMAP of 4271 single-nucleus RNA profiles of human lung tissue. colored by cluster. b Expression of selected cell-type markers in the UMAPs of FFPE human lung. Gene expression levels are indicated by shades of bule. c Dot plot of the average expressions of top five markers in each of the 10 cell types. d Counts of different RNA biotypes detected in FFPE(lung). Expression level (color scale) of marker genes across clusters and the percentage of cells expressing them (dot size). e Proportion of annotated cell types of FFPE(lung) by snCED-seq. Source data are provided as a Source Data file (a–e).

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