Fig. 3: Structural Variation in 16 G. barbadense accessions. | Nature Communications

Fig. 3: Structural Variation in 16 G. barbadense accessions.

From: Pangenome analysis reveals yield- and fiber-related diversity and interspecific gene flow in Gossypium barbadense L.

Fig. 3

a Comparisons between PAVs identified by SyRI pipelines and HiFi read-mapping pipelines among 13 G. barbadense accessions. The number of “Detected” and “Undetected” PAVs, respectively, indicated the number of SVs that are identified and not identified using HiFi reads. b The number of SV terms of four types in each G. barbadense accession and the number of non-redundant SV sets. c The frequency of SVs in G. barbadense accessions indicated that most SVs were present in one or only a few accessions. d Percentage of SVs sharing overlap with different genomic regions in 16 G. barbadense accessions. The upper and lower edges of the boxes represent the 75% and 25% quartiles, the central line denotes the median, and the whiskers extend to 1.5 × IQR. n = 16 in each group. e Distribution of PAV density between repeats and non-repeated regions. f The number of the repeat sequence overlaps with the PAVs. g Distribution of the SVs when an SV was present in half of the 16 G. barbadense accessions. Source data are provided as a Source Data file.

Back to article page