Table 1 Statistics of the genome assembly and annotation of 12 G. barbadense accessions
Accession | Domestication | Total length (Mb) | Anchor and orient (%) | Contig N50 (Mb) | BUSCOa | LAI | Repeat | Gene number | BUSCOb | Source |
|---|---|---|---|---|---|---|---|---|---|---|
GB0249 | Landrace | 2240 | 98.78 | 67.72 | 99.5 | 14.51 | 72.63% | 70,810 | 98.7 | This study |
GB0262 | Landrace | 2299 | 98.46 | 67.25 | 99.5 | 14.69 | 69.88% | 73,693 | 99.1 | This study |
GB0333 | Primitive | 2237 | 98.93 | 77.88 | 99.6 | 15.01 | 69.61% | 71,569 | 99.1 | This study |
Yuma | Cultivar | 2244 | 98.68 | 70.64 | 99.6 | 14.46 | 72.63% | 75,508 | 98.8 | This study |
K101 | Primitive | 2213 | 98.70 | 58.95 | 99.6 | 14.83 | 68.92% | 70,910 | 98.6 | This study |
Giza7 | Cultivar | 2237 | 98.88 | 65.91 | 99.6 | 14.17 | 72.62% | 75,387 | 98.9 | This study |
GB0307 | Primitive | 2247 | 98.28 | 56.54 | 99.5 | 14.18 | 72.69% | 71,709 | 98.9 | This study |
GB0414 | Primitive | 2252 | 98.01 | 61.99 | 99.6 | 14.54 | 71.46% | 72,249 | 98.9 | This study |
GB0660 | Primitive | 2235 | 98.68 | 63.78 | 99.5 | 14.08 | 70.97% | 71,553 | 99.3 | This study |
GB0776 | Primitive | 2269 | 97.48 | 56.31 | 99.5 | 13.78 | 72.16% | 73,917 | 99.2 | This study |
Junhai-1 | Cultivar | 2267 | 97.74 | 68.79 | 99.6 | 15.18 | 72.89% | 75,729 | 98.8 | This study |
CEG | Primitive | 2251 | 98.23 | 64.62 | 99.6 | 15.11 | 72.51% | 74,869 | 99.0 | This study |
Gb_M210936 | Primitive | 2243 | 98.27 | 68.81 | 99.5 | 14.86 | 72.55% | 74,323 | 98.7 | 10 |
Pima90 | Cultivar | 2210 | 99.75 | 9.24 | 99.5 | 15.06 | 72.49% | 79,613 | 98.9 | 6 |
3–79 | Cultivar | 2259 | 96.04 | 12.14 | 99.5 | 10.04 | 73.19% | 70,496 | 98.7 | 7 |
PimaS6 | Cultivar | 2301 | 97.52 | 0.05 | 99.5 | 10.88 | 72.60% | 70,838 | 98.6 | 8 |
Hai7124 | Cultivar | 2227 | 98.07 | 0.08 | 99.5 | 10.53 | 71.69% | 68,618 | 97.9 | 2 |
G. darwinii | Wild | 2183 | 99.12 | 9.07 | 99.5 | 12.89 | 67.13% | 78,303 | 99.8 | 5 |
