Extended Data Fig. 7: sirenRNA accumulation and DNA methylation of selected AGLs and expression of RdDM pathway genes.
From: Dosage-sensitive maternal siRNAs determine hybridization success in Capsella
a, siRNA accumulation and CHH methylation in the endosperm of indicated genotypes on selected genes overlapping siren loci: Carubv10025009m.g (AGL33), Carubv10011966m.g (YUC10), Carubv10028580m.g (AGL62), Carubv10010156m.g (AGL28), and Carubv10002555m.g (γ-type AGL). Blue boxes represent genes, purple boxes represent TEs. b, Boxplots show DNA methylation on γ and α* type I MADS box TFs in 6 DAP endosperm of different Capsella genotypes. Boxes show median values and the interquartile range. Whiskers show the full range excluding outliers. Asterisks indicate statistically significant differences as calculated by the two-sided Wilcoxon test for paired samples, p-values were adjusted with Benjamini and Hochberg correction (*** p-value < 0.001, ** p-value < 0.01, * p-value < 0.05). c, Barplot shows log2 fold change expression level of indicated genes in comparison to respective maternal plants. Asterisks indicates statistical significance as calculated with Wald test in DESEQ2 (*** padj < 0.001, ** p- padj < 0.01, padj < 0.05).
