Fig. 2: Phylogenomic identification of attaching bacterial species. | npj Biofilms and Microbiomes

Fig. 2: Phylogenomic identification of attaching bacterial species.

From: Dynamics of gut colonization by commensal and pathogenic bacteria that attach to the intestinal epithelium

Fig. 2

a Phylogenomic tree of sequenced Enterobacterales spp. with outgroup Pseudomonas aeruginosa. Branch lengths are the number of substitutions per site and branch points indicate percentage of trees with clustering of associated taxa. b Phylogenomic tree of sequenced Alphaproteobacteria spp. Branch lengths are the number of substitutions per site and branch points indicate percentage of trees with clustering of associated taxa. c Sequenced whole genomic DNA from clean C. elegans ERT413 colonized with LUAb1 or LUAb2 were analyzed via CZ-ID (formerly IDseq). Pie charts show the percent of non-C. elegans reads that were identified to belong to a particular bacterial species or genus that represented >0.01% of the total reads. d 16S PCR and amplicon sequencing of C. elegans ERT413 colonized with LUAb1 or LUAb2, with uncolonized N2 as a control.

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