Table 3 Multicompartment network model parameters
From: A Python toolbox for neural circuit parameter inference
Symbol | Value/definition | Description |
---|---|---|
X | {E, I} | Population names |
NX ∈ {NE, NI} | {8192, 1024} | Population sizes |
\({{\rm{r}}}_{{\rm{X}}\max }({\rm{x}},{\rm{y}})\) | 150 μm | Maximum radial position of somas in the XY plane |
\({\bar{{\rm{r}}}}_{{\rm{X}}\max }({\rm{z}})\) | 0 μm | Mean of the normal distribution that defines the position of somas in the z-axis |
\({\rm{\sigma }}\left({{\rm{r}}}_{{\rm{X}}\max }({\rm{z}})\right)\) | 75 μm | Standard deviation of the normal distribution that defines the position of somas in the z-axis |
\({\mathscr{S}}\) | {soma, apic, basal} | Morphology sections |
\({{\rm{L}}}_{{\mathscr{S}}}\) | \(\left\{\begin{array}{l}\left\{30,1000,200\right\}{\rm{\mu }}{\rm{m}}\,{\rm{for}}\,{\rm{X}}={\rm{E}}\\ \left\{30,200,200\right\}{\rm{\mu }}{\rm{m}}\,{\rm{for}}\,{\rm{X}}={\rm{I}}\end{array}\right.\) | Section lengths |
\({{\rm{d}}}_{{\mathscr{S}}}\) | \(\left\{\begin{array}{l}\left\{30,3,2\right\}{\rm{\mu }}{\rm{m}}\,{\rm{for}}\,{\rm{X}}={\rm{E}}\\ \left\{15,2,2\right\}{\rm{\mu }}{\rm{m}}{\rm{for}}\,{\rm{X}}\,={\rm{I}}\end{array}\right.\) | Section diameter |
\({{\rm{n}}}_{{\rm{seg}}}^{{\mathscr{S}}}\) | \(\left\{\begin{array}{l}\left\{1,21,5\right\}{\rm{for}}\,{\rm{X}}={\rm{E}}\\ \left\{1,5,5\right\}{\rm{for}}\,{\rm{X}}={\rm{I}}\end{array}\right.\) | Number of segments per section |
cm | 1 μF cm-2 | Membrane capacitance |
Ra | 100 Ω cm | Axial resistivity |
\({{\rm{g}}}_{{\rm{L}}}^{{\mathscr{S}}}\) | {0.0000338, 0.0000589, 0.0000589} S cm−2 | Passive leak conductance |
EL | −90 mV | Passive leak reversal potential |
\({\bar{{\rm{g}}}}_{{\rm{N}}{{\rm{a}}}_{{\rm{t}}}}^{{\mathscr{S}}}\) | {2.04, 0.0213, 0.0213} S cm−2 | Nat conductance |
ENa | 50 mV | Na+ reversal potential |
\({\bar{{\rm{g}}}}_{{\rm{K}}{{\rm{v}}}_{3.1}}^{{\mathscr{S}}}\) | {0.693, 0.000261, 0.000261} S cm−2 | Kv3.1 conductance |
EK | −85 mV | K+ reversal potential |
\({\bar{{\rm{g}}}}_{{{\rm{I}}}_{{\rm{h}}}}^{{\mathscr{S}}}\) | {0.0002, 0.002, 0.002} S cm−2 | Ih current conductance |