Fig. 3: Evaluation of ROSE output using SE-to-gene Links analysis.
From: SEgene identifies links between super enhancers and gene expression across cell types
a SE ranking plot: Genomic regions classified as super-enhancers are ranked based on the H3K27ac ChIP-seq signal, highlighted with red markers indicating SEs with significant peak-to-gene correlations. b Pie chart showing the proportion of SEs significantly correlated with P2GL data. c Bar plot displaying ranked merged SEs identified in tumor samples. The merged SE region of interest (chr7:748,439–998,341) is highlighted with a red bar. d Stacked read plot for the chr7:748,439–998,341 region. e IGV visualization of the merged SE region (chr7:748,439–998,341). The regions of the ADAP1 and CYP2W1 genes are highlighted with red boxes.
