Extended Data Fig. 10: Characterization of the genic content of haploblock regions. | Nature Ecology & Evolution

Extended Data Fig. 10: Characterization of the genic content of haploblock regions.

From: Haploblocks contribute to parallel climate adaptation following global invasion of a cosmopolitan plant

Extended Data Fig. 10

a, b. Histograms summarizing expected numbers of GWAS hits for each haploblock for survival to flowering (a) and total seed mass (b) within the North American common gardens across 160,000 simulations. Observed number of GWAS hits are displayed as vertical red lines. c. Differential expression analysis of RNAseq data within each haploblock. Percentage of genes differentially expressed and absolute expression (log2FoldChange) is presented between ranges (Europe vs. North America), between Treatments (Well-Watered vs. Dry Down), and between Latitudes (Low vs. High). Values on either side of paratheses for absolute expression are the observed / expected values. Expected values are derived from a two-sided permutation analysis that re-sampled regions from across the genome with replacement. P-values are greater than 0.05 in all cases.

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