Extended Data Fig. 9: Autosomally inherited ornaments are complex traits.
From: Deep learning reveals the complex genetic architecture of male guppy colouration
a) Pictograms of eight ornaments with (partial) autosomal inheritance. b) Illustrative GWAS peaks for the association with the ornaments depicted in A. Each point is a genetic variant, with black points surpassing the FDR-threshold, and the red point is the top variant. Horizontal lines show the location of all annotated genes, with labels only shown for characterized genes. c) Bars indicate the proportion of individuals with the ornament (depicted in A) depending on their genotype at the top variant. The proportion of variation in the phenotype that is explained by the top variant is displayed as Nagelkerke’s R2 calculated from a logistic regression. d) PheWAS heatmaps displaying Z-scores for the effect of the top variant on orange or black color across the body, controlling for autosomal and sex-linked relatedness.
