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Expanding the utility of precision oncology knowledge bases

Precision oncology knowledge bases currently provide cancer clinicians with a point-of-care interpretation of the therapeutic actionability of somatic genomic sequencing results. Here, we discuss key deficiencies in these knowledge bases that present as opportunities for the next generation of data annotation.

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Fig. 1: Precision oncology knowledge bases, version 2.0.

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Correspondence to Debyani Chakravarty.

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The authors declare no competing interests.

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ClinVar: https://www.ncbi.nlm.nih.gov/clinvar/

WHO Classification of Tumours online: https://tumourclassification.iarc.who.int/welcome/

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Suehnholz, S., Chakravarty, D. Expanding the utility of precision oncology knowledge bases. Nat Rev Cancer 25, 651–652 (2025). https://doi.org/10.1038/s41568-025-00846-3

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