Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Clinical Outlook
  • Published:

Graph neural networks for computational nephrology

Graph neural networks offer a unifying artificial intelligence framework to model related objects, ranging from tissue architecture and geometrical relationships to patient similarity and multi-organ networks. Applications of this technology in nephrology include computational representation of kidney histopathology and modelling of the complex interactions between organs in kidney diseases.

This is a preview of subscription content, access via your institution

Access options

Buy this article

USD 39.95

Prices may be subject to local taxes which are calculated during checkout

References

  1. Esteva, A. et al. A guide to deep learning in healthcare. Nat. Med. 25, 24–29 (2019).

    Article  PubMed  CAS  Google Scholar 

  2. Bronstein, M. M., Bruna, J., LeCun, Y., Szlam, A. & Vandergheynst, P. Geometric deep learning: going beyond Euclidean data. IEEE Signal Process. Mag. 34, 18–42 (2017).

    Article  Google Scholar 

  3. Wu, Z. et al. A comprehensive survey on graph neural networks. IEEE Trans. Neural Netw. Learn. Syst. 32, 4–24 (2020).

    Article  Google Scholar 

  4. Lu, M. Y. et al. Data-efficient and weakly supervised computational pathology on whole-slide images. Nat. Biomed. Eng. 5, 555–570 (2021).

    Article  PubMed  PubMed Central  Google Scholar 

  5. Kers, J. et al. Deep learning-based classification of kidney transplant pathology: a retrospective, multicentre, proof-of-concept study. Lancet Digit. Health 4, e18–e26 (2022).

    Article  PubMed  CAS  Google Scholar 

  6. Hölscher, D. L. et al. Next-generation morphometry for pathomics-data mining in histopathology. Nat. Commun. 14, 470 (2023).

    Article  PubMed  PubMed Central  Google Scholar 

  7. Long, Y. et al. Spatially informed clustering, integration and deconvolution of spatial transcriptomics with GraphST. Nat. Commun. 14, 1155 (2023).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  8. He, Q. et al. Global attention-based GNN with Bayesian collaborative learning for glomerular lesion recognition. Comput. Biol. Med. 173, 108369 (2024).

    Article  PubMed  Google Scholar 

  9. Parisot, S. et al. Disease prediction using graph convolutional networks: application to autism spectrum disorder and Alzheimer’s disease. Med. Image Anal. 48, 117–130 (2018).

    Article  PubMed  Google Scholar 

  10. Pandey, A. K. & Loscalzo, J. Network medicine: an approach to complex kidney disease phenotypes. Nat. Rev. Nephrol. 19, 463–475 (2023).

    Article  PubMed  Google Scholar 

Download references

Acknowledgements

P.B.’s work is supported by the German Research Foundation (DFG, projects 322900939 and 445703531), European Research Council (ERC Consolidator Grant No. 101001791), the Federal Ministry of Education and Research (BMBF, STOP-FSGS-01GM2202C), and the Innovation Fund of the Federal Joint Committee (Transplant.KI, No. 01VSF21048). We thank all participants of the Kármán Conference: Computational Nephropathology – New Frontiers and Challenges in Precision Nephropathology held at RWTH Aachen University, Germany, in 2026 for many interesting discussions and perspectives.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Michael T. Schaub or Peter Boor.

Ethics declarations

Competing interests

The authors declare no competing interests.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Schaub, M.T., Boor, P. Graph neural networks for computational nephrology. Nat Rev Nephrol (2026). https://doi.org/10.1038/s41581-026-01059-z

Download citation

  • Published:

  • Version of record:

  • DOI: https://doi.org/10.1038/s41581-026-01059-z

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing