Extended Data Fig. 8: Recombination and phylogenetic analysis of mink-derived Pipistrellus bat coronavirus HKU5.
From: Farmed fur animals harbour viruses with zoonotic spillover potential
(a) Maximum clade credibility (MCC) tree based on genome of mink-derived HKU5-like viruses. (b) Simplot was used to perform recombination scanning on the mink-derived HKU5-like sequences and related reference sequences. (c) Neighbour-Net reconstruction based on the complete genome sequences of mink HKU5 and Bat CoVs using Splitstree5, employing the HKY85 substitution model and 1000 bootstraps. (d) IQ-TREE (v2.1.4) was used to estimate maximum likelihood trees based on RdRp and S gene nucleotides, respectively.
