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Catalytic allylation of native hexoses and pentoses in water with indium

Abstract

Carbohydrates are an abundant, inexpensive and renewable biomass feedstock that could be a cornerstone for sustainable chemical manufacturing, but scalable and environmentally friendly methods that leverage these feedstocks are lacking. For example, 1-allyl sorbitol is the foundational building block for the polypropylene clarifying agent Millad NX 8000, which is produced on the multi-metric ton scale annually, but the manufacturing process at present requires superstoichiometric amounts of tin1,2. The NX 8000 additives dominate about 80% of the global clarified polypropylene market3 and are used in concentrations of 0.01–1% during polypropylene production to improve its transparency and resistance to high temperatures, translating to 300–30,000 metric tons annually. The market volume of polypropylene in 2022 was approximately 79.01 million metric tons (MMT), with demand expected to rise by nearly 33% to 105 MMT by 2030 (ref. 4). The cost and sustainability benefits of clarified polypropylene are driving this demand, necessitating more clarifying agents5. Here we report a high-yielding allylation of unprotected carbohydrates in water using a catalytic amount of indium metal and either allylboronic acid or the pinacol ester (allylBpin) as donors. Aldohexoses, aminohexoses, ketohexoses and aldopentoses are all allylated in high yield under mild conditions and the indium metal is recoverable and reusable with no loss of catalytic activity. Leveraging these features, this process was translated to a scalable continuous synthesis of 1-allyl sorbitol in flow6 with high yield and productivity through Bayesian optimization of reaction parameters.

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Fig. 1: Methods for allylation of carbohydrates.
Fig. 2: Optimization of allylation of glucose.
Fig. 3: Recoverability and reusability studies of In(0).
Fig. 4: Bayesian optimization in the flow reactor.

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Data availability

All experimental and spectroscopic data are available in the paper and  Supplementary Information.

Code availability

The code for the Bayesian optimization presented in this paper is available at GitHub (https://github.com/fflorit/Millad).

References

  1. Hernández-Fernández, J., Puello-Polo, E. & Marquez, E. Identifying, quantifying, and recovering a sorbitol-type petrochemical additive in industrial wastewater and its subsequent application in a polymeric matrix as a nucleating agent. Molecules 28, 4948 (2023).

    PubMed  PubMed Central  MATH  Google Scholar 

  2. Milliken invests to meet global demand for PP clarifier. Addit. Polym. 2014, 7 (2014).

  3. Paben, J. APR gives recyclability thumbs up to PP additive. Resource Recycling (5 September 2019); https://resource-recycling.com/plastics/2019/09/05/apr-gives-recyclability-thumbs-up-to-pp-additive/

  4. Market volume of polypropylene worldwide from 2015 to 2022, with a forecast for 2023 to 2030 (in million metric tons). Statista https://www.statista.com/statistics/1245169/polypropylene-market-volume-worldwide (2023).

  5. Tullo, A. H. Making clearer polypropylene. Chem. Eng. News 88, 34–36 (2010).

    Google Scholar 

  6. Lin, M.-H. et al. Enabling technologies in carbohydrate chemistry: automated glycan assembly, flow chemistry and data science. Chem. Bio. Chem. 24, e202200607 (2023).

    ADS  CAS  PubMed  Google Scholar 

  7. Zhou, F. & Li, C.-J. En route to metal-mediated and metal-catalysed reactions in water. Chem. Sci. 10, 34–46 (2019).

    CAS  PubMed  MATH  Google Scholar 

  8. Hanessian, S. Total Synthesis of Natural Products: TheChironApproach (Pergamon Press, 1983).

  9. Hanessian, S., Giroux, S. & Merner, B. L. Design and Strategy in Organic Synthesis: From the Chiron Approach to Catalysis (Wiley-VCH, 2013).

  10. Newhouse, T., Baran, P. S. & Hoffmann, R. W. The economies of synthesis. Chem. Soc. Rev. 38, 3010–3021 (2009).

    CAS  PubMed  PubMed Central  MATH  Google Scholar 

  11. Trost, B. M. The atom economy—a search for synthetic efficiency. Science 254, 1471–1477 (1991).

    ADS  CAS  PubMed  MATH  Google Scholar 

  12. Wender, P. A., Verma, V. A., Paxton, T. J. & Pillow, T. H. Function-oriented synthesis, step economy, and drug design. Acc. Chem. Res. 41, 40–49 (2008).

    CAS  PubMed  Google Scholar 

  13. Wei, X.-F., Shimizu, Y. & Kanai, M. An expeditious synthesis of sialic acid derivatives by copper(I)-catalyzed stereodivergent propargylation of unprotected aldoses. ACS Cent. Sci. 2, 21–26 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  14. Chung, K. & Waymouth, R. M. Selective catalytic oxidation of unprotected carbohydrates. ACS Catal. 6, 4653–4659 (2016).

    CAS  MATH  Google Scholar 

  15. Kan, J. et al. Umpolung carbonyls enable direct allylation and olefination of carbohydrates. Sci. Adv. 8, eabm6840 (2022).

    ADS  CAS  PubMed  PubMed Central  Google Scholar 

  16. Schmid, W. & Whitesides, G. M. Carbon-carbon bond formation in aqueous ethanol: diastereoselective transformation of unprotected carbohydrates to higher carbon sugars using allyl bromide and tin metal. J. Am. Chem. Soc. 113, 6674–6675 (1991).

    CAS  Google Scholar 

  17. Kim, E., Gordon, D. M., Schmid, W. & Whitesides, G. M. Tin- and indium-mediated allylation in aqueous media: application to unprotected carbohydrates. J. Org. Chem. 58, 5500–5507 (1993).

    CAS  Google Scholar 

  18. Petrier, C. & Luche, J. L. Allylzinc reagents additions in aqueous media. J. Org. Chem. 50, 910–912 (1985).

    CAS  Google Scholar 

  19. Nokami, J., Okawara, R., Otera, J. & Sudo, T. Allylation of aldehydes and ketones in the presence of water by allylic bromides, metallic tin, and aluminum. Organometallics 2, 191–193 (1983).

    CAS  Google Scholar 

  20. Chan, T.-H. & Li, C.-J. A concise chemical synthesis of (+)-3-deoxy-d-glycero-d-galacto-nonulosonic acid (KDN). J. Chem. Soc. Chem. Commun. 1992, 747–748 (1992).

    MATH  Google Scholar 

  21. Li, C.-J. & Chan, T. H. Organometallic reactions in aqueous media with indium. Tetrahedron Lett. 32, 7017–7020 (1991).

    CAS  MATH  Google Scholar 

  22. Tan, K.-T., Chng, S.-S., Cheng, H.-S. & Loh, T.-P. Development of a highly α-regioselective metal-mediated allylation reaction in aqueous media: new mechanistic proposal for the origin of α-homoallylic alcohols. J. Am. Chem. Soc. 125, 2958–2963 (2003).

    CAS  PubMed  Google Scholar 

  23. Kumar, D., Vemula, S. R., Balasubramanian, N. & Cook, G. R. Indium-mediated stereoselective allylation. Acc. Chem. Res. 49, 2169–2178 (2016).

    CAS  PubMed  Google Scholar 

  24. Xie, C. et al. Dibenzylidene sorbitol (DBS)-based compounds, compositions and methods for using such compounds. US patent 2007/0249850 (2007).

  25. Xie, C. Substituted alditol compounds, compositions, and methods. US patent 7,888,454 (2011).

  26. Yus, M., González-Gómez, J. C. & Foubelo, F. Catalytic enantioselective allylation of carbonyl compounds and imines. Chem. Rev. 111, 7774–7854 (2011).

    CAS  PubMed  MATH  Google Scholar 

  27. Mlynarski, S. N., Schuster, C. H. & Morken, J. P. Asymmetric synthesis from terminal alkenes by cascades of diboration and cross-coupling. Nature 505, 386–390 (2014).

    ADS  CAS  PubMed  MATH  Google Scholar 

  28. Denmark, S. E. & Fu, J. Catalytic enantioselective addition of allylic organometallic reagents to aldehydes and ketones. Chem. Rev. 103, 2763–2794 (2003).

    CAS  PubMed  MATH  Google Scholar 

  29. Schneider, U., Ueno, M. & Kobayashi, S. Catalytic use of indium(0) for carbon−carbon bond transformations in water: general catalytic allylations of ketones with allylboronates. J. Am. Chem. Soc. 130, 13824–13825 (2008).

    CAS  PubMed  MATH  Google Scholar 

  30. Molander, G. A., Cavalcanti, L. N., Canturk, B., Pan, P. S. & Kennedy, L. E. Efficient Hydrolysis of Organotrifluoroborates via Silica Gel and Water. J. Org. Chem. 74, 7364–7369 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  31. Saloranta, T. et al. From mannose to small amphiphilic polyol: perfect linearity leads to spontaneous aggregation. Cryst. Growth Des. 16, 655–661 (2016).

    CAS  Google Scholar 

  32. Paquette, L. A. & Mitzel, T. M. Addition of allylindium reagents to aldehydes substituted at Cα or Cβ with heteroatomic functional groups. Analysis of the modulation in diastereoselectivity attainable in aqueous, organic, and mixed solvent systems. J. Am. Chem. Soc. 118, 1931–1937 (1996).

    CAS  Google Scholar 

  33. Gordon, D. M. & Whitesides, G. M. Indium-mediated allylations of unprotected carbohydrates in aqueous media: a short synthesis of sialic acid. J. Org. Chem. 58, 7937–7938 (1993).

    CAS  MATH  Google Scholar 

  34. Coley, C. W. et al. A robotic platform for flow synthesis of organic compounds informed by AI planning. Science 365, eaax1566 (2019).

    CAS  PubMed  MATH  Google Scholar 

  35. Nambiar, A. M. K. et al. Bayesian optimization of computer-proposed multistep synthetic routes on an automated robotic flow platform. ACS Cent. Sci. 8, 825–836 (2022).

    CAS  PubMed  PubMed Central  MATH  Google Scholar 

  36. Shields, B. J. et al. Bayesian reaction optimization as a tool for chemical synthesis. Nature 590, 89–96 (2021).

    ADS  CAS  PubMed  MATH  Google Scholar 

  37. Hartman, R. L., McMullen, J. P. & Jensen, K. F. Deciding whether to go with the flow: evaluating the merits of flow reactors for synthesis. Angew. Chem. Int. Ed. 50, 7502–7519 (2011).

    CAS  MATH  Google Scholar 

  38. Johnson, M. D. et al. Continuous liquid vapor reactions part 1: design and characterization of a reactor for asymmetric hydroformylation. Org. Process Res. Dev. 20, 888–900 (2016).

    CAS  MATH  Google Scholar 

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Acknowledgements

We thank the technical support teams of NMR, mass spectrometry and microanalytical laboratories of the University of Illinois at Urbana-Champaign and Massachusetts Institute of Technology. This work was also supported by the Molecule Maker Lab Institute: an AI Research Institutes programme supported by the US National Science Foundation under grant no. CHE 2019897. We are also grateful to the National Institutes of Health (GM R35 127010) for generous financial support.

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Authors and Affiliations

Authors

Contributions

T.A. conceived and contributed to the allylBpin reaction and flow chemistry, including experimental analytical setup, reaction development, DOE design, data analysis, product characterization and manuscript writing. T.M. and M.A. contributed to the allylBF3K reaction, including experimental analytical setup, reaction development, data analysis, product characterization and manuscript writing. M.D.B. discussed the results, provided suggestions, supervised and revised the paper. F.F. developed the Bayesian algorithm to flow and contributed to writing the paper. K.F.J. supervised the flow chemistry and revised the paper. S.E.D. conceptualized, supervised the project and revised the paper. All authors contributed to assembling the final draft of the paper.

Corresponding authors

Correspondence to Klavs F. Jensen or Scott E. Denmark.

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Competing interests

T.A., T.M., M.A., F.F., M.D.B., K.F.J. and S.E.D. are inventors on a patent application related to this work (US patent application no. 63/737,683) filed by the University of Illinois at Urbana-Champaign.

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Nature thanks Dawen Niu and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.

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This file contains Supplementary Text and Data, including Supplementary Tables 1–10 and Supplementary Figs. 1–15, see contents for details.

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Adak, T., Menard, T., Albritton, M. et al. Catalytic allylation of native hexoses and pentoses in water with indium. Nature 640, 94–99 (2025). https://doi.org/10.1038/s41586-025-08690-z

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