Extended Data Fig. 10: Comparison of tested CorHMM models and node marginal likelihoods of final ER model.
From: Spatiotemporal faunal connectivity across global sea floors
(a) ER = Equal rates, ARD = all rates, SYM = symmetrical rates, ARD-2 and SYM-2 reduce the number of rates to be estimated by excluding transitions that tended to zero in the SYM model, ARD-3 (the final model) further reduces the number of rates estimated by excluding transitions that tended to zero in the ARD-2 model. The reported model in each case was the model with the highest Log Likelihood from 10 starts. (b) Decisive (ML > 0.67) marginal states (biomes) from the ER model, mapped onto edges on the phylogeny (root = 265 Ma). The majority (99%) of decisive edges date from less than 65 Ma.
