Table 4 Summary of repeat annotation statistics.
From: A chromosome-level genome assembly of Cape hare (Lepus capensis)
Type | De novo | RepBase | Combine | |||
|---|---|---|---|---|---|---|
Length (Bp) | % In genome | Length (Bp) | % In genome | Length (Bp) | % In genome | |
SINEs | 413786235 | 13.97 | 536921844 | 18.13 | 571555121 | 19.30 |
LINEs | 614839288 | 20.76 | 449247580 | 15.17 | 656474660 | 22.17 |
LTR elements | 131452427 | 4.44 | 101273820 | 3.42 | 153130635 | 5.17 |
DNA elements | 167320911 | 5.65 | 40532485 | 1.37 | 145488560 | 4.91 |
Rolling-circles | 2887521 | 0.1 | 0 | 0 | 1377844 | 0.05 |
Unclassified | 1231 | 0.02 | 333484 | 0.01 | 325688 | 0.01 |
Small RNA | 0 | 0 | 1208175 | 0.04 | 439380 | 0.01 |
Satellites | 0 | 0 | 115979970 | 3.92 | 164849 | 0.01 |
Simple repeats | 30634565 | 1.03 | 37187847 | 1.26 | 209918864 | 7.09 |
Low complexity | 4748245 | 0.16 | 6519075 | 0.22 | 4097702 | 0.14 |
Total repeats | 1365670423 | 46.13 | 1289204280 | 43.54 | 1742973303 | 58.86 |
