Table 4 Statistics of the annotated Chaunax sp. repeat sequences.
From: Chromosome-level genome assembly and annotation of a sea toad (Chaunax sp.)
Type | Number | Length | Rate(%) |
|---|---|---|---|
Transposon elements | |||
ClassI:Retroelement | 304,135 | 69,920,908 | 9.89 |
ClassI/DIRS | 3,415 | 2,577,693 | 0.36 |
ClassI/LINE | 110,848 | 23,996,247 | 3.39 |
ClassI/LTR/Copia | 29 | 22,056 | 0 |
ClassI/LTR/ERV | 20,758 | 2,512,593 | 0.36 |
ClassI/LTR/Gypsy | 27,468 | 9,611,583 | 1.36 |
ClassI/LTR/Ngaro | 20,697 | 6,842,407 | 0.97 |
ClassI/LTR/Pao | 1,219 | 216,685 | 0.03 |
ClassI/LTR/Unknown | 112,093 | 23,174,821 | 3.28 |
ClassI/SINE | 7.608 | 966,823 | 0.14 |
ClassII:DNA transposon | 362,730 | 73,977,659 | 10.46 |
ClassII/Academ | 3 | 184 | 0 |
ClassII/CACTA | 18,090 | 3,618,232 | 0.51 |
ClassII/Crypton | 94 | 7,227 | 0 |
ClassII/Dada | 6,860 | 1,889,800 | 0.27 |
ClassII/Ginger | 1,436 | 137,551 | 0.02 |
ClassII/Helitron | 81,371 | 11,101,878 | 1.57 |
ClassII/S3EU | 6,707 | 2,070,824 | 0.29 |
ClassII/Kolobok | 2,080 | 267,509 | 0.04 |
ClassII/Maverick | 2,555 | 285,368 | 0.04 |
ClassII/Merlin | 473 | 31,289 | 0 |
ClassII/Mutator | 981 | 83,472 | 0.01 |
ClassII/P | 368 | 33,726 | 0 |
ClassII/PIF-Harbinger | 23,592 | 5,171,781 | 0.73 |
ClassII/PiggyBac | 4,264 | 855,196 | 0.12 |
ClassII/Sola | 37 | 2,077 | 0 |
ClassII/Tc1-Mariner | 40,311 | 16,586,782 | 2.35 |
ClassII/Unknown | 131,376 | 25,514,112 | 3.61 |
ClassII/Zator | 202 | 19,975 | 0 |
ClassII/Zisupton | 1,014 | 57,204 | 0.01 |
ClassII/hAT | 40,916 | 6,243,472 | 0.88 |
Unknown | 152 | 29,165 | 0 |
srpRNA | 7 | 1,585 | 0 |
Total | 667,024 | 143,929,317 | 20.36 |
Tandem repeats | |||
Microsatellite(1–9 bp units) | 337,339 | 17,823,267 | 2.52 |
Minisatellite(10–99 bp units) | 89,511 | 37,488,465 | 5.30 |
Satellite(> = 100 bp units) | 13,960 | 14,228,963 | 2.01 |
Total | 440,810 | 69,540,695 | 9.84 |
