Table 5 Gene prediction through integrating multiple methods.
From: Chromosome-level genome assembly and annotation of a sea toad (Chaunax sp.)
Methods | Software | Species | Gene number |
|---|---|---|---|
Ab initio | Augustus | — | 35,059 |
SNAP | — | 72,826 | |
Homology-based | L. litulon | 19,016 | |
Lophiodes sp. | 21,209 | ||
S. erythrina | 21,669 | ||
T. rubripes | 18,090 | ||
T. septentrionalis | 18,299 | ||
RNAseq | GeneMarkS-T | — | 19,513 |
PASA | — | 16,583 | |
Integration | EVM | — | 25,280 |
