Table 4 The summary of gene structure and functional annotation in P. tinctoria genome.
Annotation | Methods | Number | Percentage (%) | |
|---|---|---|---|---|
Structure annotation | de novo | Augustus | 60,470 | 78.79 |
GlimmHMM | 85,167 | 110.98 | ||
homology | F. tataricum | 69,688 | 90.81 | |
R. hastatulus | 42,441 | 55.30 | ||
B. vulgaris | 165,724 | 215.94 | ||
A. thaliana | 60,127 | 78.35 | ||
transcriptome | RNA-seq | 20,641 | 26.90 | |
MAKER | 80,565 | 105.00 | ||
PASA | 76,742 | 100 | ||
Functional annotation | SwissProt | 52,103 | 67.89 | |
TrEMBL | 71,561 | 93.25 | ||
InterPro | 50,190 | 65.40 | ||
NR | 72,073 | 93.92 | ||
GO | 52,465 | 68.37 | ||
KEGG | 71,784 | 93.54 | ||
Total annotated | 72,352 | 94.28 | ||
