Table 1 Summary of the produced morphometry in our study.
From: A Multi-Scale Neuron Morphometry Dataset from Peta-voxel Mouse Whole-Brain Images
Morphometric type | File format | Coordinate space | # files | File storage size | Production platform / method |
|---|---|---|---|---|---|
Soma | Excel (xlsx) | Raw brain & CCFv3 | 1 (182,497 somata) | 16 MB | CAR-Mobile |
Local morphology | SWC | Raw brain & CCFv3 | 15,441 | 144 MB + 141 MB | App2 & neuTube |
Full morphology | SWC | Raw brain & CCFv3 | 1,876 | 1.56 GB + 1.43 GB | Collaborative Annotation Platform (CAR) |
Axonal bouton | SWC | Raw brain & CCFv3 | 1,876 (2,63 million boutons) | 1.57 GB + 1.32 GB | Bouton generator |
Axonal tract | SWC | CCFv3 | 1,876 | 150 MB | Axonal tract extractor |
Axonal arbor | SWC | CCFv3 | 1,876 (3,776 arbors) | 23 MB | AutoArbor |
Dendritic arbor | SWC | CCFv3 | 1,876 | 168 MB | Vaa3D plugin (NeuroMorphoLib: neuron_split) |
