Table 4 Summary statistics of the predicted sequence repeats in the assembled genome of Engraulis japonicus.
From: Chromosome-level genome assembly and annotation of Japanese anchovy (Engraulis japonicus)
Classifications | RepBase TEs | TE Proteins | De novo | Combined TEs | |
|---|---|---|---|---|---|
Length (bp) | Length (bp) | Length (bp) | Length (bp) | Percentage (%) | |
DNA | 281,372,463 | 12,262,076 | 205,887,363 | 439727956 | 30.9 |
LINE | 54,790,448 | 24,396,415 | 46,786,211 | 89305039 | 6.3 |
SINE | 6,479,834 | 0 | 7,481,582 | 12418808 | 0.9 |
LTR | 71,416,312 | 15,715,349 | 62,531,367 | 129152198 | 9.1 |
Satellite | 30,019,921 | 0 | 8,537,638 | 37951176 | 2.7 |
Simple_repeat | 0 | 0 | 31,947 | 31947 | 0 |
Other | 20,283 | 0 | 0 | 20283 | 0 |
Unknown | 6,122,332 | 9,318 | 170,712,575 | 176666970 | 12.4 |
Total | 372,141,572 | 52,358,445 | 488,125,606 | 780865692 | 54.9 |
