Table 8 Comparison of the genome assemblies of Clupeiform species.
From: Chromosome-level genome assembly and annotation of Japanese anchovy (Engraulis japonicus)
Clupeiform species | Accession | Genome size | Contigs N50 | Scaffolds N50 | Assembly level | Complete BUSCO |
|---|---|---|---|---|---|---|
Alosa alosa | GCA_017589495.2 | 854.4 Mb | 1.2 Mb | 35.4 Mb | Chromosome | 91.5% |
Alosa fallax | GCA_029875135.1 | 755.9 Mb | 2.0 kb | 2.1 kb | Scaffold | — |
Alosa sapidissima | GCA_018492685.1 | 903.6 Mb | 1.6 Mb | 38.4 Mb | Chromosome | 95.6% |
Clupea harengus | GCA_900700415.2 | 786.3 Mb | 1.0 Mb | 29.8 Mb | Chromosome | 94.9% |
Coilia grayii | GCA_042479465.1 | 920.6 Mb | 2.6 Mb | 36.4 Mb | Chromosome | — |
Coilia nasus | GCA_027475355.1 | 851.7 Mb | 26.6 Mb | 35.4 Mb | Chromosome | 92.5% |
Denticeps clupeoides | GCA_900700375.2 | 567.4 Mb | 3.1 Mb | 22.8 Mb | Chromosome | 94.6% |
Encrasicholina punctifer | GCA_041295995.1 | 1.2 Gb | 2.2 kb | 21.9 Mb | Scaffold | — |
Engraulis encrasicolus | GCA_034702125.1 | 1.4 Gb | 1.4 Mb | 56.4 Mb | Chromosome | 90.4% |
Limnothrissa miodon | GCA_017657215.1 | 580.9 Mb | 31.1 kb | 455.5 kb | Scaffold | — |
Nematalosa erebi | GCA_036025975.1 | 757.2 Mb | 2.9 kb | — | Contig | — |
Sardina pilchardus | GCA_963854185.1 | 869.4 Mb | 1.1 Mb | 34.6 Mb | Chromosome | 84.5% |
Sardinella fimbriata | GCA_030264415.1 | 899.5 Mb | 1.7 kb | 4.1 kb | Scaffold | — |
Sardinella gibbosa | GCA_034783695.1 | 812.5 Mb | 2 kb | 7.1 kb | Scaffold | — |
Sardinella hualiensis | GCA_032353275.1 | 709.4 Mb | 2.6 kb | 11.4 Mb | Scaffold | — |
Sardinella lemuru | GCA_030264355.1 | 545.3 Mb | 1.4 kb | 31.5 kb | Scaffold | — |
Sardinella longiceps | GCA_027497455.2 | 1.1 Gb | 153.4 kb | 31.1 Mb | Scaffold | — |
Sardinella tawilis | GCA_030264315.1 | 783.3 Mb | 5 kb | 14.9 Mb | Scaffold | — |
Setipinna tenuifilis | GCA_030347295.1 | 798.4 Mb | 1.4 Mb | 32.4 Mb | Chromosome | 89.6% |
Sprattus sprattus | GCA_963457725.1 | 840.3 Mb | 1.2 Mb | 33.8 Mb | Chromosome | 95.7% |
Tenualosa ilisha | GCA_015244755.2 | 146.3 Mb | 43.4 kb | — | Contig | — |
Tenualosa thibaudeaui | GCA_027481765.1 | 668.9 Mb | 17.1 Mb | — | Contig | — |
Thryssa baelama | GCA_041045025.1 | 884.4 Mb | 2.3 kb | 5.7 kb | Scaffold | — |
Engraulis japonicus | GCA_040112795.1 | 1.4 Gb | 456 kb | 55.0 Mb | Chromosome | 94.07% |
