Table 3 Repetitive elements in the genome assembly of R. laevigata.
From: A high-quality chromosome-scale genome assembly of the Cherokee rose (Rosa laevigata)
Class | Count | Length (bp) | Percentage of genome |
---|---|---|---|
DNA | 123,095 | 32,549,863 | 6.59% |
CMC-EnSpm | 5,024 | 2,153,580 | 0.44% |
Kolobok-H | 157 | 117,546 | 0.02% |
MITE | 101,533 | 24,483,676 | 4.95% |
MULE-MuDR | 5,473 | 1,885,946 | 0.38% |
PIF-Harbinger | 3,236 | 1,373,504 | 0.28% |
TcMar-Pogo | 308 | 53,829 | 0.01% |
hAT-Ac | 3,621 | 1,292,543 | 0.26% |
hAT-Tag1 | 1,390 | 564,187 | 0.11% |
hAT-Tip100 | 928 | 506,657 | 0.10% |
Others | 1,155 | 118,395 | 0.02% |
LINE | 25,574 | 12,437,695 | 2.52% |
LTR | 335,062 | 208,234,699 | 42.13% |
Caulimovirus | 395 | 210,830 | 0.04% |
Copia | 154,604 | 83,585,730 | 16.91% |
ERV1 | 122 | 29,019 | 0.01% |
Gypsy | 171,998 | 122,278,562 | 24.74% |
Ngaro | 868 | 164,756 | 0.03% |
Pao | 109 | 25,021 | 0.01% |
Others | 202 | 28169 | 0.00% |
unknown | 6,764 | 1,912,612 | 0.39% |
RC | — | — | — |
Helitron | 3,878 | 1,508,822 | 0.31% |
SINE | — | — | — |
Trna-RTE | 288 | 113,976 | 0.02% |
Unknown | 89,361 | 25,677,995 | 5.20% |
TandemRepeat | 82,300 | 5,086,674 | 1.03% |
Total | 659,558 | 285,609,724 | 57.80% |