Table 3 Repetitive elements in the genome assembly of R. laevigata.

From: A high-quality chromosome-scale genome assembly of the Cherokee rose (Rosa laevigata)

Class

Count

Length (bp)

Percentage of genome

DNA

123,095

32,549,863

6.59%

CMC-EnSpm

5,024

2,153,580

0.44%

Kolobok-H

157

117,546

0.02%

MITE

101,533

24,483,676

4.95%

MULE-MuDR

5,473

1,885,946

0.38%

PIF-Harbinger

3,236

1,373,504

0.28%

TcMar-Pogo

308

53,829

0.01%

hAT-Ac

3,621

1,292,543

0.26%

hAT-Tag1

1,390

564,187

0.11%

hAT-Tip100

928

506,657

0.10%

Others

1,155

118,395

0.02%

LINE

25,574

12,437,695

2.52%

LTR

335,062

208,234,699

42.13%

Caulimovirus

395

210,830

0.04%

Copia

154,604

83,585,730

16.91%

ERV1

122

29,019

0.01%

Gypsy

171,998

122,278,562

24.74%

Ngaro

868

164,756

0.03%

Pao

109

25,021

0.01%

Others

202

28169

0.00%

unknown

6,764

1,912,612

0.39%

RC

Helitron

3,878

1,508,822

0.31%

SINE

Trna-RTE

288

113,976

0.02%

Unknown

89,361

25,677,995

5.20%

TandemRepeat

82,300

5,086,674

1.03%

Total

659,558

285,609,724

57.80%