Table 4 Number of gene annotated in the assembled genome of R. laevigata based on the different methods used.

From: A high-quality chromosome-scale genome assembly of the Cherokee rose (Rosa laevigata)

Method

Software

Gene number

Ab initio

Augustus

40,542

GeneMark-ESSuite

48,361

SNAP

29,176

Homology-based

GeMoMa

73,250

RNAseq

Stringtie + PASA

34,651

Integration

EVM

40,411

Correction

PASA

37,117