Table 4 Number of gene annotated in the assembled genome of R. laevigata based on the different methods used.
From: A high-quality chromosome-scale genome assembly of the Cherokee rose (Rosa laevigata)
Method | Software | Gene number |
---|---|---|
Ab initio | Augustus | 40,542 |
GeneMark-ESSuite | 48,361 | |
SNAP | 29,176 | |
Homology-based | GeMoMa | 73,250 |
RNAseq | Stringtie + PASA | 34,651 |
Integration | EVM | 40,411 |
Correction | PASA | 37,117 |