Table 9 Assembly assessment for the genome of Chinese cherry ‘Duiying’.
From: Chromosome-level genome assembly of tetraploid Chinese cherry (Prunus pseudocerasus)
Category | Assessment values | |
|---|---|---|
Paired-end reads realigned to the assembly | Mapping rate (%) | 98.52 |
Average sequencing depth (×) | 31.42 | |
Coverage (%) | 99.82 | |
Coverage at least 10X (%) | 98.82 | |
BUSCO summary | Complete (%) | 99.4 |
Complete with single-copy (%) | 0.9 | |
Complete with duplicated (%) | 98.5 | |
Fragmented (%) | 0.4 | |
Missing (%) | 0.2 | |
Total BUSCO group searched | 1614 | |
SNP analyses | Number of all SNPs (Ratio) | 5819 (0.000543%) |
Number of heterozygosis SNPs (Ratio) | 5725 (0.000534%) | |
Number of homology SNP | 94 (9.08 × 10−8) |
