Table 2 The details of quality-control (QC) for three ccRCC samples.
Sample ID | Total reads | Fraction of fragments overlapping TSS | Fraction of transposition events in peaks in cell barcodes | Fraction of fragments overlapping any targeted region | Estimated number of cells | Median fragments per cell | Number of cells after filtering |
|---|---|---|---|---|---|---|---|
RCC30 | 401,919,964 | 32.6% | 41.5% | 65.9% | 6,586 | 13,232 | 6,264 |
RCC61 | 423,539,675 | 34.4% | 42.3% | 66.7% | 5,016 | 12,613 | 4,699 |
RCC76 | 339,117,818 | 35.9% | 45.9% | 68.5% | 8,492 | 7,638 | 7,740 |
