Table 6 Classification of repeat annotation in R. japonica.
From: Chromosome-scale genome assembly and annotation of Huzhang (Reynoutria japonica)
Type | Count | bpMasked | %masked | |
|---|---|---|---|---|
DNA | 361,452 | 123,655,557 | 3.750% | |
LINE | 179,811 | 89,270,298 | 2.707% | |
LTR | Gypsy | 784,044 | 559,129,203 | 16.958% |
Copia | 298,684 | 225,219,958 | 6.831% | |
Others | 1,141,149 | 795,573,075 | 24.129% | |
Total LTR | 2,223,877 | 1,579,922,236 | 47.918% | |
SINE | 1,432 | 127,148 | 0.004% | |
Simple_repeat | 911,757 | 26,630,451 | 0.808% | |
Satellite | 911,757 | 1,036,954 | 0.031% | |
Unknown | 3,132,445 | 1,415,727,046 | 42.938% | |
Total | 6,009,012 | 2,465,775,058 | 74.785% | |
