Table 4 Detailed statistics of repetitive elements identified in the assembled C. grayii genome, including element types, sequence lengths, and genome percentages.
From: A chromosome-level genome assembly of Gray’s grenadier anchovy, Coilia grayii
Class | Number of elements | Length of sequence (bp) | Percentage of sequence (%) | |
|---|---|---|---|---|
Interspersed Repeats | 972,292 | 242,503,008 | 26.33% | |
LTR | 12,802 | 12,116,646 | 1.31% | |
LINE | 85,055 | 28,829,357 | 3.13% | |
SINE | 53,130 | 6,462,416 | 0.70% | |
Retroposon | 300 | 106,456 | 0.01% | |
DNA transposons | 204,728 | 61,231,490 | 6.65% | |
Unknown | 594,849 | 129,788,459 | 14.09% | |
Rolling-circles | 4,984 | 6,602,562 | 0.71% | |
tRNA | 14,320 | 2,865,988 | 0.31% | |
snRNA | 2,122 | 352,916 | 0.03% | |
Non-interspersed Repeats | 1,328,040 | 90,837,244 | 9.86% | |
Simple_repeat | 1,203,278 | 77,739,414 | 8.44% | |
Low_complexity | 112,939 | 10,325,270 | 1.12% | |
rRNA | 10,564 | 1,867,491 | 0.20% | |
Satellite | 1,259 | 1,084,611 | 0.11% | |
Total | 2,300,332 | 324,313,717 | 35.22% | |
