Table 3 Assembly length and quality score statistics of transcripts and unigenes before and after redundancy reduction.
From: De novo transcriptomes of floral bracts for 22 Bougainvillea accessions
Before Redundancy Reduction | After Redundancy Reduction | |||
|---|---|---|---|---|
Transcript | Unigene | Transcript | Unigene | |
Total Number | 424,410 | 209,009 | 283,246 | 174,758 |
Total Base | 377,161,295 | 134,049,128 | 230,936,810 | 123,952,302 |
Largest Length (bp) | 13,564 | 13,564 | 13,564 | 13,564 |
Smallest Length (bp) | 201 | 201 | 201 | 201 |
Average Length (bp) | 888.67 | 641.36 | 815.32 | 709.28 |
N50 Length (bp) | 1,619 | 962 | 1,310 | 1,079 |
E90N50 Length (bp) | 2,060 | 2,455 | 2,093 | 2,473 |
Mean Mapped Percent (%) | 70.904 | 57.236 | 69.279 | 55.847 |
GC (%) | 39.28 | 38.7 | 39.08 | 38.68 |
TransRate Score | 0.19935 | 0.18535 | 0.30152 | 0.23612 |
BUSCO Score | ||||
Complete (%) | 88.1 | 72.3 | 92.8% | 85.1% |
Single-Copy (%) | 19.7 | 69.7 | 29.7% | 82.8% |
Duplicated (%) | 68.4 | 2.6 | 63.1% | 2.2% |
Fragmented (%) | 4.2 | 12.5 | 2.5% | 6.7% |
Missing (%) | 7.7 | 15.2 | 4.7% | 8.2% |
