Table 4 Gene structure annotation of the Semiaphis heraclei genome using three methods.
From: A chromosome-level genome assembly of the aphid Semiaphis heraclei (Takahashi)
Type | Gene Set | Number | Average transcript length(bp) | Average CDS length(bp) | Average exons per gene | Average exon length(bp) | Average intron length(bp) |
|---|---|---|---|---|---|---|---|
De novo | Augustus | 24,245 | 6,238.61 | 1,159.08 | 4.77 | 243.13 | 1,348.28 |
SNAP | 66,098 | 6,624.79 | 521.36 | 5.68 | 91.78 | 1,304.05 | |
Homolog | Dmel | 7,400 | 5,381.84 | 1,097.19 | 4.97 | 220.88 | 1,079.96 |
Apis | 20,749 | 4,340.82 | 1,106.46 | 5.05 | 219.14 | 798.76 | |
Rpad | 12,577 | 8,419.79 | 1,453.77 | 6.69 | 217.39 | 1,224.84 | |
RNAseq | transcripts | 15,710 | 15,499.26 | 2,470.64 | 7.85 | 314.63 | 1,901.26 |
PASA | 8,159 | 8,952.09 | 1,197.54 | 5.62 | 213.14 | 1,679.03 | |
EVM | EVM | 23,984 | 6,976.32 | 1,167.64 | 4.96 | 235.57 | 1,468.07 |
Pasa-update* | pasaupdate | 23,923 | 7,162.59 | 1,168.70 | 4.94 | 236.36 | 1,519.50 |
Final set* | Final | 13,983 | 10,274.52 | 1,487.29 | 6.98 | 213.14 | 1,469.92 |
